Pairwise Alignments

Query, 410 a.a., response regulator receiver protein (RefSeq) from Shewanella sp. ANA-3

Subject, 588 a.a., NADH:ubiquinone oxidoreductase subunit (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  289 bits (740), Expect = 1e-82
 Identities = 166/412 (40%), Positives = 229/412 (55%), Gaps = 35/412 (8%)

Query: 10  EIQGLIKINASKCKGCDACKQFCPTHAIHGASGAVHS-------------IDEDKCLSCG 56
           E+   I  N  KC  C  C+  C      GA GA+               + + +C  CG
Sbjct: 143 EVTSSIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNTTIAPAFDRMMKDSECTYCG 202

Query: 57  QCLINCPFSAIEETHSALETVIKKLADKNTTVVGIIAPAVRVAIGEEFGLGTGELVTGKL 116
           QC+  CP  A+ E       ++  LAD +  V+   APAVR A+GEEFGL  G LVTGK+
Sbjct: 203 QCVAVCPVGALTE-RDYTNRLLDDLADPDKIVIVQTAPAVRAALGEEFGLPPGTLVTGKM 261

Query: 117 YGAMNQAGFK-IFDCNFAADLTIMEEGSEFIHRLHANVKGEENAGALPQFTSCCPGWVRY 175
             A+ + GF  +FD +FAADLTIMEEGSE ++RL   + G+++   LP  TSCCP WV +
Sbjct: 262 VYALRELGFDYVFDTDFAADLTIMEEGSEILNRLTRYLDGDKSV-RLPILTSCCPAWVNF 320

Query: 176 LETRYPALLPNLSTAKSPQQMAGTVAKTYGAKVYQMQPENIFTVSVMPCTSKKLEASRPE 235
            E  +P +L   STA+SPQQM G++AK+Y A+   +  E +  VS+MPC +KK E  R E
Sbjct: 321 FEHHFPDMLDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSIMPCLAKKYECDRDE 380

Query: 236 FNSAWQYHQEQGANTPSYQDIDAVLTTREMAQLLKMLDIDLANTPEYQGDSMFSEYTGAG 295
           F                  D+D  ++TRE+A+L+K  +I      +   D+   E TGAG
Sbjct: 381 FK------------VNGVPDVDYSISTRELARLIKRANIGFTLVLDSPFDNPMGESTGAG 428

Query: 296 TIFGTTGGVMEAALRTAHKVLTGTEMAKLEFEPVRGLKGVKSASVSLFDTQLNQNVTVNV 355
            IFGTTGGVMEAALR+ +++ TG  +  + FE VRGL GV+ A++ L   +L       V
Sbjct: 429 VIFGTTGGVMEAALRSVYEIYTGQPLKNVNFEQVRGLSGVRRATIDLNGFEL------KV 482

Query: 356 AVVHDMGNNIEPVLRDVMAGTSPYHFIEVMNCAGGCVNGGGQPIEGKGSSWL 407
            + H +G N   +L D+  G + YH IE+M C GGC+ GGGQP+    S  L
Sbjct: 483 GIAHGLG-NARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQPLHHGNSDVL 533