Pairwise Alignments

Query, 809 a.a., RNAse R (RefSeq) from Shewanella sp. ANA-3

Subject, 828 a.a., ribonuclease R from Dechlorosoma suillum PS

 Score =  746 bits (1925), Expect = 0.0
 Identities = 396/814 (48%), Positives = 533/814 (65%), Gaps = 37/814 (4%)

Query: 4   DPHFEREQDKYENPIPSREYIIEYLRSQKSPITRDSIAVALQIHDEEQLEALRRRLRAME 63
           DP FERE  KYE P+PSREY ++ L+ Q  P++ D +   L I  +E+ +  +RRL AME
Sbjct: 13  DPFFERECQKYEIPLPSREYTMQLLQDQGRPVSFDQLVALLDISRDEE-DLFQRRLNAME 71

Query: 64  RDGELVFTRGQSYGLPEKMDLISGTVLGHREGYGFFKPDEGGDDLFISNRDMLMYFHGDK 123
           RDG+L+  R  SY LPEK DLI G V GH +G+GF KPD+G DDLF+  + M    HGD+
Sbjct: 72  RDGQLLRNRKNSYILPEKADLIPGKVEGHPDGFGFVKPDDGSDDLFLEPKQMDKVLHGDR 131

Query: 124 VLAQKAGMDRKGRREARIVRLIQPRSAAIVGRFHVDSGMAFVIADDKRITQEILI---AT 180
           VL +  G+DR+GRREA IV +++  +  +VGR   + G+ FV+A++KRI+Q+ILI   A 
Sbjct: 132 VLVRCIGLDRRGRREATIVEVLERANTRLVGRLMEEHGIQFVVAENKRISQDILIPPTAM 191

Query: 181 EDRNG---ARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTW 237
            D+     AR G+VV+VE+  +P R+ +  G++ E+LG    PGMEIEIALR +DLP  +
Sbjct: 192 TDKRAKLKARPGNVVMVEILEQPSRYSQPIGRIVEILGNYADPGMEIEIALRKHDLPFEF 251

Query: 238 SAVIEKKLRRIPDEVTEADKVGRVDLRDLPLVTIDGEDARDFDDAVYAEVKPSGGWRLWV 297
           S   + + + +PD+V ++D  GR DLR+LPLVTIDGE ARDFDDAV+ E K   GWRL V
Sbjct: 252 SKEAQAENKAVPDKVKKSDFKGREDLRELPLVTIDGETARDFDDAVFCE-KVGRGWRLVV 310

Query: 298 AIADVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEM 357
           AIADVS+YVR   ALD EA  RGNSVYFP +VIPMLPEK+SNG+CSLNP V+RL MV +M
Sbjct: 311 AIADVSHYVRPGMALDQEAYDRGNSVYFPRRVIPMLPEKLSNGICSLNPDVERLAMVCDM 370

Query: 358 TISARGKLSGYKFYPAVMHSHARFTYTQVAAMLEGG--PIAPEHEALFPHLQCLQSLYLA 415
            ISA G +  Y+FYPAV  SHAR TY QV   L G   P    H+AL PHLQ L  L+  
Sbjct: 371 NISATGSIGKYRFYPAVFRSHARLTYNQVWGWLSGQSQPENEVHQALQPHLQNLYKLFQV 430

Query: 416 LDEQRAERGAIAFETLETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSAAKFVKK 475
           L + R +RGAI FET+ETQ +FN Q KI+ IVP  RN AH++IEECM+ ANV A+ F+ +
Sbjct: 431 LLKARKKRGAIDFETVETQMLFNAQGKIENIVPVVRNDAHRLIEECMLAANVCASGFLHE 490

Query: 476 HKGEILYRVHESPSEQKLANFKEFLAERGLSMGGGLEPTPADYQNVMLQIADRPDAELIQ 535
           HK   LYRVH+ P+ +KL N + FL E G S+ GG EP   DY  ++ +I  RPD +L+Q
Sbjct: 491 HKQACLYRVHQGPTPEKLENLRAFLGEFGFSLAGGDEPKAKDYAELLEKIQGRPDTQLLQ 550

Query: 536 VMLLRSMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKEKGEANEK 595
            ++LRS+RQA Y P+N GHFGLA E Y HFTSPIRRYPDL++HR I+ +LA         
Sbjct: 551 TVMLRSLRQAQYAPENLGHFGLAYEAYTHFTSPIRRYPDLLVHRAIKAVLA--------- 601

Query: 596 WTSDGGYHYQLDELDLLGEECSNTERRADEATRDVSDWLKCEFMQDHVGDTFEAVIASVT 655
                G  Y   + + +G  CS TERRADEATRDV +WLKC +M++ +G+ FE  IA V 
Sbjct: 602 -----GETYNPGKWEDIGLHCSGTERRADEATRDVDNWLKCFYMKERIGEEFEGTIAGVA 656

Query: 656 NFGLFVRLNDLFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQIYQVGDPVTVKVAAVNL 715
            FG+FV L+++F++G+VH+S LG DY+ F+P + +++GE +G+ +++GD + VK+   +L
Sbjct: 657 AFGIFVALDEVFVEGMVHVSELGEDYFHFEPAKHQMLGERSGKRFRLGDRLRVKLVRADL 716

Query: 716 DDRQIDLVMLGDSGKG---------GRRKSAPSREKPMTARERVNREGAKMAKAAKSTGA 766
           +  +ID ++  +  +G          R+ +         A +   R G+   K  KS   
Sbjct: 717 ESGRIDFILAQEKKEGPAGDDEVVTWRKNTTGKPALGAAAPQGKPRAGSGGGKPGKSAPG 776

Query: 767 KSKAGSDKAGASKSKSKAGAK---PKKSVKNSAK 797
             KAG    G  + KS A AK   PK+S K  AK
Sbjct: 777 -GKAGGPGQGGHRGKSPAAAKTGAPKRSGKGGAK 809