Pairwise Alignments

Query, 809 a.a., RNAse R (RefSeq) from Shewanella sp. ANA-3

Subject, 661 a.a., exoribonuclease R from Marinobacter adhaerens HP15

 Score =  289 bits (740), Expect = 3e-82
 Identities = 193/643 (30%), Positives = 320/643 (49%), Gaps = 25/643 (3%)

Query: 87  GTVLGHREGYGFFKPDEGGDDLFISNRDMLMYFHGDKVLAQKAGMDRKGRREARIVRLIQ 146
           GTV      +GF   DEG D +F+   +M     GD+V   +  ++ KG+ +  +  L++
Sbjct: 26  GTVKATNGRFGFVALDEGRD-VFLPPEEMQKVLPGDRVNVTEQEVE-KGKTQGVVDELLE 83

Query: 147 PRSAAIVGRFHVDSGMAFVIADDKRITQEILIATEDRNGARQGDVVVVELTRRPGRFVKA 206
            R    VGR+ V     FV+ +   I + I I  ++R  A+Q D +  ++ + P +  K 
Sbjct: 84  TRLNTFVGRYLVKGKGHFVVPETPGINRWIFIPPKERMNAQQDDYIYCQIHKHPIKDGKG 143

Query: 207 AGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSAVIEKKLRRIPDEVTEADKVGRVDLRDL 266
             KV  V+GK   PG+E    L  +DL  TW   +  +   + +   E+ + GR D  D 
Sbjct: 144 QAKVLRVIGKAGEPGIERSFTLATFDLADTWPDAVRAQADSLGEGDIESRETGREDRTDR 203

Query: 267 PLVTIDGEDARDFDDAVYAEVKPSGGWRLWVAIADVSYYVRTDSALDTEARARGNSVYFP 326
           P VTID    +D DDA+ AE   +G W L +AIAD +  + TDS  + EA  R  ++YFP
Sbjct: 204 PYVTIDSPGTQDMDDALLAEPNATG-WTLSIAIADPTAVIDTDSPAEQEAFNRATAIYFP 262

Query: 327 SQVIPMLPEKISNGLCSLNPHVDRLCMVAEMTISARGKLSGYKFYPAVMHSHARFTYTQV 386
            + +PMLP+ IS  LCSL P   RL +V ++ ++  G L  Y F+ AV+ S  + +Y  V
Sbjct: 263 GEPLPMLPDSISTRLCSLMPEAKRLSLVCDLQVNNDGSLGDYSFHQAVIQSKGKLSYELV 322

Query: 387 AAMLEG---GPIAPEHEALFPHLQCLQSLYLALDEQRAERGAIAFETLETQFIFNDQRKI 443
           + ++EG     I    EA+   L  L     AL + R E   ++ +  E +   ++ ++I
Sbjct: 323 SNLIEGREDDDIKALPEAVANSLDQLHQAATALRKWRNEHALLSGDRPEFRLRLDENKRI 382

Query: 444 DKIVPRARNQAHKIIEECMILANVSAAKFVKKHKGEILYRVHESPSEQKLANFKEFLAER 503
             I P  +N+AH+++EECM+ AN  AA F+  H    L+  H    + +  N +  +   
Sbjct: 383 RLIEPSIQNEAHRLVEECMVAANRCAADFLSNHTAG-LFIQHPGLRDDRADNIRSLIDSH 441

Query: 504 GLSMGGGLEPTPADYQNVMLQIADRPDAEL-IQVMLLRSMRQAIYTPDNEGHFGLALEEY 562
              +  G++   A+    +++  D  +AE+ ++ +L R + +A  +     H G+ L+ Y
Sbjct: 442 APHL-SGVDAHQAEGFRKLMKETDSLEAEVPVKAILSRQLARAELSFKPAPHQGMGLDAY 500

Query: 563 AHFTSPIRRYPDLVLHRVIRYLLAKEKGEANEKWTSDGGYHYQLDELDLLGEECSNTERR 622
             FTSP+R++ D  +HR+I+  L     +A  +           D+L+ L       + R
Sbjct: 501 TTFTSPLRKFSDFYVHRLIKAALWDTPMKALTE-----------DQLEAL----QAAQIR 545

Query: 623 ADEATRDVSDWLKCEFMQDHVGDTFEAVIASVTNFGLFVRLNDLFIDGLVHISSLGSDYY 682
           A +A   +  WLK +F +    +    VI+     G FVRL+   ++G V    L    Y
Sbjct: 546 ARQAANSLESWLKSDFAKTLGEEPMAGVISRTVPAGFFVRLDANGLEGFVSCKDLDGK-Y 604

Query: 683 QFDPMRQRLIGEHTGQIYQVGDPVTVKVAAVNLDDRQIDLVML 725
            FDP+  RLI    G+I+Q+  PVTV  + V+ + RQI+  ++
Sbjct: 605 SFDPVTMRLIHNKNGRIFQLEQPVTVSFSGVDDERRQINFKLV 647