Pairwise Alignments

Query, 809 a.a., RNAse R (RefSeq) from Shewanella sp. ANA-3

Subject, 864 a.a., ribonuclease R from Ralstonia sp. UNC404CL21Col

 Score =  696 bits (1797), Expect = 0.0
 Identities = 386/857 (45%), Positives = 522/857 (60%), Gaps = 65/857 (7%)

Query: 17  PIPSREYIIEYLRSQKSPITRDSIAVALQIHDEEQLEALRRRLRAMERDGELVFTRGQSY 76
           PIPSRE I+  LR+  SP++   IA AL +  +E  +   +RL AMERDG++   R   Y
Sbjct: 7   PIPSREEILGVLRTSGSPLSATDIAKALSVTRKEH-DGFIKRLTAMERDGQIELNRKGRY 65

Query: 77  GLPEKMDLISGTVLGHREGYGFFKPDEGGDDLFISNRDMLMYFHGDKVLAQKAGMDRKGR 136
            L  + + I G V+GHR+G+GFF  D+G  D+F+  R+M    HGD+ L +  G DR+GR
Sbjct: 66  ELAHQPNFIEGRVIGHRDGFGFFVRDDGEPDIFLPEREMQKAMHGDRALVRAVGYDRRGR 125

Query: 137 REARIVRLIQPRSAAIVGRFHVDSGMAFVIADDKRITQEILIATEDRNGARQGDVVVVEL 196
            E +IV ++Q  +  ++GR   +SG   V  +DKR+ ++ILIA + +  A+ G VV VE+
Sbjct: 126 SEGQIVEILQRANKRVIGRLLSESGTLVVAPEDKRLGRDILIAPKGQGKAKVGQVVSVEI 185

Query: 197 TRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSAVIEKKLRRIPDEVTEAD 256
              P R+V+  G+V EVLG+   PGMEIEIA+R Y +PH +S   +++   +PD V +AD
Sbjct: 186 LEYPDRYVQPIGRVVEVLGEIDDPGMEIEIAVRKYGVPHEFSEPTQREAEALPDVVRDAD 245

Query: 257 KVGRVDLRDLPLVTIDGEDARDFDDAVYAE---VKPSGGWRLWVAIADVSYYVRTDSALD 313
             GR+DLRD+PLVTIDGEDARDFDDAVYAE   +  S GWRL VAIADVS+YVR    LD
Sbjct: 246 LAGRIDLRDVPLVTIDGEDARDFDDAVYAEPVKIGRSKGWRLIVAIADVSHYVRPGHPLD 305

Query: 314 TEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEMTISARGKLSGYKFYPA 373
            +A  R  SVYFP +VIPMLPEK+SNGLCSLNP VDRLCMV +  I+A+G++  Y+FYPA
Sbjct: 306 ADAIDRATSVYFPRRVIPMLPEKLSNGLCSLNPEVDRLCMVCDAVITAKGEIKAYQFYPA 365

Query: 374 VMHSHARFTYTQVAAMLEG--GPIAPEHEALFPHLQCLQSLYLALDEQRAERGAIAFETL 431
           VMHS AR TY +V A+L    GP A +   L PHLQ L  LY  L + R ERGAI F+T 
Sbjct: 366 VMHSKARLTYNEVWAILSNVKGPEAAKRAPLVPHLQELYELYQTLLKARRERGAIDFDTT 425

Query: 432 ETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSAAKFVKKHKGEILYRVHESPSEQ 491
           ET  + N Q KI++I+PR RN AH++IEECM+ ANV AA+ ++K+K   LYRVH  P+E+
Sbjct: 426 ETYIVCNAQGKIEQILPRTRNDAHRLIEECMLTANVCAAEMLEKYKHPALYRVHAGPTEE 485

Query: 492 KLANFKEFLAERGLSMGGGLEPTPADYQNVMLQIADRPDAELIQVMLLRSMRQAIYTPDN 551
           KL   + FL   GL++GGG +P  ADY  +M ++A RPDA ++Q MLLRSM+QA+Y+PDN
Sbjct: 486 KLQALRAFLKTSGLTLGGGDKPQAADYAELMEKVAARPDAPMLQTMLLRSMQQAVYSPDN 545

Query: 552 EGHFGLALEEYAHFTSPIRRYPDLVLHRVI-------RYLLAKEKGEANEKWTSDGGYHY 604
            GHFGLA   YAHFTSPIRRYPDL++HR I       RY+ A   G       S      
Sbjct: 546 IGHFGLAYPAYAHFTSPIRRYPDLLVHRSIKAILNRTRYVPALAPGVQLNSALSPKARRL 605

Query: 605 QLDE-----------------LDLLGEECSNTERRADEATRDVSDWLKCEFMQDHVGDTF 647
           Q +                     LG  CS  ERRADEA+RDV  WLKC FM+D +G+ F
Sbjct: 606 QAEAEKGVPAAVVNKAKVEAIWHELGVHCSANERRADEASRDVEAWLKCYFMRDKLGNEF 665

Query: 648 EAVIASVTNFGLFVRLNDLFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQIYQVGDPVT 707
              +++VT+FG+FV+L++L+++GLVH++ LGSDY+Q+D  R  L GE TG  Y++ D V 
Sbjct: 666 SGTVSAVTSFGIFVQLDELYVEGLVHVTELGSDYFQYDEARNELRGERTGIRYRLTDRVR 725

Query: 708 VKVAAVNLDDRQIDLVML--------------GDSGKGGRRKSAPSREKPMTARERVNRE 753
           V++  V+LD R++D  ++              G       R++A +   P   R++  + 
Sbjct: 726 VQLLRVDLDARKMDFRLIQEPSTKALRPAKVTGAPEAAAARQAAVATPAPPVGRKKPRQL 785

Query: 754 GAKMAKAAKST--------------------GAKSKAGSDKAGASKSKSKA-GAKPKKSV 792
            A +   AK                      G     G   A  ++ K  A G KPK   
Sbjct: 786 AALLGGTAKPEESFDETLDRVIEEQPVFEPGGRALPPGHPHAKPARKKQAARGTKPKGGA 845

Query: 793 KNSAKKPKAAKRSTRKK 809
           K +A +  A K   + K
Sbjct: 846 KTAAPRKVAGKAPRKTK 862