Pairwise Alignments

Query, 809 a.a., RNAse R (RefSeq) from Shewanella sp. ANA-3

Subject, 833 a.a., ribonuclease R from Burkholderia phytofirmans PsJN

 Score =  690 bits (1781), Expect = 0.0
 Identities = 385/834 (46%), Positives = 521/834 (62%), Gaps = 34/834 (4%)

Query: 1   MIKDPHFEREQDKYENPIPSREYIIEYLRSQKSPITRDSIAVALQIHDEEQLEALRRRLR 60
           M ++   ++   K+  PIPSRE I+  LR+ ++P+  + IA AL I  +E+ E   +RL 
Sbjct: 1   MQREKIIDKPLSKFPYPIPSREEILGVLRTSEAPLAANDIAEALSIKRQER-EGFFKRLG 59

Query: 61  AMERDGELVFTRGQSYGLPEKMDLISGTVLGHREGYGFFKPDEGGDDLFISNRDMLMYFH 120
           AMERDG++   +   Y L    + ++G V GHR+GYGF   D+G DDLF+   +M    H
Sbjct: 60  AMERDGQIRLDQRNLYQLTHPSNFVAGRVQGHRDGYGFLIRDDGQDDLFLPTAEMQKVMH 119

Query: 121 GDKVLAQKAGMDRKGRREARIVRLIQPRSAAIVGRFHVDSGMAFVIADDKRITQEILIAT 180
            D+VLA+  G DR+GR E  IV +    +  ++GR   ++G   V  +DKRI  +ILI  
Sbjct: 120 NDRVLARIVGYDRRGRPEGHIVEVTDRANKRVIGRLLNENGALIVAPEDKRIGHDILIQQ 179

Query: 181 EDRNGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSAV 240
             +  A+ G VVVVELT  P R  +  G+V EVLG    PGMEIEIA+R Y +PH +S  
Sbjct: 180 NTKK-AKVGQVVVVELTDFPSRHSQPLGRVVEVLGDIDDPGMEIEIAVRKYGVPHEFSQA 238

Query: 241 IEKKLRRIPDEVTEADKVGRVDLRDLPLVTIDGEDARDFDDAVYAEVKPSG---GWRLWV 297
              +  R+PDEV   D   R+DLRD+PLVTIDGEDARDFDDAVY E    G   G+RL V
Sbjct: 239 ALDEASRLPDEVRPVDARHRIDLRDVPLVTIDGEDARDFDDAVYCEPVQVGRGEGFRLIV 298

Query: 298 AIADVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEM 357
           AIADVS+YV   S LD +A  R  SVYFP +VIPMLPEK+SNGLCSLNPHVDR  +V +M
Sbjct: 299 AIADVSHYVHPKSGLDADAIERSTSVYFPRRVIPMLPEKLSNGLCSLNPHVDRCVLVCDM 358

Query: 358 TISARGKLSGYKFYPAVMHSHARFTYTQVAAMLEG--GPIAPEHEALFPHLQCLQSLYLA 415
            I+ARG++  Y+FYP VMHS AR TYT+VAA+L+   GP A    AL P LQ L  +Y +
Sbjct: 359 IITARGEVKAYQFYPGVMHSAARLTYTEVAAVLKNTKGPEATRRAALLPQLQNLYGVYKS 418

Query: 416 LDEQRAERGAIAFETLETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSAAKFVKK 475
           L   R +RGAI F+T ET  + N Q KI++I+PR RN AHK+IEECM+ ANV AA F+K+
Sbjct: 419 LFAARQKRGAIDFDTTETYIVCNAQGKIEQIIPRTRNDAHKLIEECMLAANVCAADFLKR 478

Query: 476 HKGEILYRVHESPSEQKLANFKEFLAERGLSMGGGLEPTPADYQNVMLQIADRPDAELIQ 535
           +K   L+RVH  P+ +KL N + FL   GL++ GG +P  +DY  +M QI +RPDA+++Q
Sbjct: 479 NKHPGLFRVHAGPTAEKLENLRTFLRGMGLTLAGGDKPHASDYAALMAQIRERPDAQMLQ 538

Query: 536 VMLLRSMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKEK------ 589
            MLLRSM+QA+Y+PDN GHFGLA E YAHFTSPIRRYPDL+ HR I  +L   K      
Sbjct: 539 TMLLRSMQQAVYSPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIYAILQGRKYQPEPP 598

Query: 590 --GEANEKWTSDGGYHYQLDE-------------LDLLGEECSNTERRADEATRDVSDWL 634
              E N   +       Q D+              + LG  CS  ERRADEA+RDV  WL
Sbjct: 599 QGVELNTALSPRARAMQQADDEKRGRVRGNNVAIWEELGLHCSANERRADEASRDVEAWL 658

Query: 635 KCEFMQDHVGDTFEAVIASVTNFGLFVRLNDLFIDGLVHISSLGSDYYQFDPMRQRLIGE 694
           KC FM+D +G+ +  ++  VT+FG+FV+L+ LFI+GLVH++ LGSDY+Q+D ++  L GE
Sbjct: 659 KCYFMRDKLGEEYGGMVNGVTSFGIFVQLDSLFIEGLVHVTELGSDYFQYDEIKNELRGE 718

Query: 695 HTGQIYQVGDPVTVKVAAVNLDDRQIDLVMLGDSGKGGRRKSAPSREKPMTARERVNREG 754
            TG  Y++ D V V+V+ V+LD R+ID  ++ D+         PS +K           G
Sbjct: 719 RTGIRYRLSDRVRVQVSRVDLDARKIDFRLVRDTPIKPPLVRGPSADK-----SSGENGG 773

Query: 755 AKMAKAAKSTGAKSKAGSDKAGASKSKSKAGAKPKKSVKNSAKKPKAAKRSTRK 808
           A++     + G     G+ +  A+ +++ A  K  ++ + +AKK  AA +S  K
Sbjct: 774 ARVRALPPAEGGAPAPGARRKKAAPAQT-AAVKEARAARGAAKKHGAATKSAPK 826