Pairwise Alignments

Query, 432 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella sp. ANA-3

Subject, 518 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  117 bits (292), Expect = 1e-30
 Identities = 121/455 (26%), Positives = 186/455 (40%), Gaps = 89/455 (19%)

Query: 45  ANPLFLKAVGYSLDEIVGKHHKLFCAEYYVNTSEYQQFWRELKQGQAKEGKFPRVHKNGQ 104
           A+  F    GY+LDE+V + H +      +    ++  W  LK G++  G      KNG 
Sbjct: 33  ASKEFCDVAGYTLDELVNQPHNMV-RHPDMPPEAFKDMWEHLKAGKSWMGMVKNRCKNGD 91

Query: 105 EIWLRATYFPIKLDGKITKIMKTAAVITEDKYQLDAQAALFSALQKSQAIIEFSPEGNIL 164
             W+ A   PIK +GK+ +       +   +  +D    L+  ++  +   +       L
Sbjct: 92  HYWVDAFASPIKENGKVVEYQSVR--LCPSRQHVDNADKLYKEIKAGKTPWQLKMPRTRL 149

Query: 165 --NANANFLRTMGYSKEQLQGKHHRLFCFDNFYQDN----PHFWDDLRRGQYKK---GLF 215
                  F+   G S           F  D F+             L   Q+ +    L 
Sbjct: 150 WQRLGLGFIVAAGVS-----------FAADRFFAGAGLPLMLVLTILMAYQFTRRLETLS 198

Query: 216 QRKNAYGDSIWLEAVYNPVMDDHGKVVKVIKFASDITQRII-----KSHAIRDAANIAHA 270
           Q      D+  +E VYN  +DD  ++   +K        ++      S  I +AA ++  
Sbjct: 199 QEARKVFDNPLMELVYNGRVDDLSEIQLAMKMRQSELNAVVGRIQDSSIQIGEAAKMSSQ 258

Query: 271 TSQST-------------------------VEQANRGVQLLDATVNTSNAIAAQTH---- 301
            S +T                          E A+      DATV+  NA     H    
Sbjct: 259 NSATTADNLDAQTRETEQLATAITQMNITATEIAHNAQAASDATVHAKNAARDGMHAVEQ 318

Query: 302 ------------KTTESML-KLNEQSQSIQAIVATISAIADQTNLLALNAAIEAARAGEQ 348
                       KT  S++ +L+ QS  I  ++  I +IA+QTNLLALNAAIEAARAG+Q
Sbjct: 319 TVDAIGEMASQMKTASSVIEQLSSQSAMIGQVMEVIQSIAEQTNLLALNAAIEAARAGDQ 378

Query: 349 GRGFAVVADEVRQLAARTSKSTGEIAAVVDKNSQLTASATSMMNEVERIAEEGK------ 402
           GRGFAVVADEVR+LA R+++ST EI  V+      T+  TS  N VE I +  K      
Sbjct: 379 GRGFAVVADEVRKLAQRSTESTKEIQEVI------TSIQTSTRNAVETIEQGNKLSVSCV 432

Query: 403 -------QQLAEVTAVMGDIRTGAENVAETVSQLS 430
                   +L  + + + DI    E +A  + +++
Sbjct: 433 DNAHLSGDKLTALLSQVSDITMRNEQIATAIEEMA 467



 Score = 35.4 bits (80), Expect = 4e-06
 Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 12/104 (11%)

Query: 151 SQAIIEFSPEGNILN----------ANANFLRTMGYSKEQLQGKHHRLFCFDNFYQDN-P 199
           +Q  + + P  N+L+          A+  F    GY+ ++L  + H +    +   +   
Sbjct: 8   TQKEVTYPPHFNLLSTTTLSSHIKYASKEFCDVAGYTLDELVNQPHNMVRHPDMPPEAFK 67

Query: 200 HFWDDLRRGQYKKGLFQRKNAYGDSIWLEAVYNPVMDDHGKVVK 243
             W+ L+ G+   G+ + +   GD  W++A  +P+  ++GKVV+
Sbjct: 68  DMWEHLKAGKSWMGMVKNRCKNGDHYWVDAFASPI-KENGKVVE 110



 Score = 33.5 bits (75), Expect = 2e-05
 Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 23/219 (10%)

Query: 218 KNAYGDSIWLEAVYNPVMDDHGKVVKVIKFASDITQRIIKSHAIRDAA-----NIAHATS 272
           KNA  D   + AV   V D  G++   +K AS + +++    A+         +IA  T+
Sbjct: 306 KNAARDG--MHAVEQTV-DAIGEMASQMKTASSVIEQLSSQSAMIGQVMEVIQSIAEQTN 362

Query: 273 ----QSTVEQANRGVQLLDATVNTSNAIAAQTHKTTESMLKLNEQSQSIQAIVATISAIA 328
                + +E A  G Q     V  ++ +     ++TES  ++ E   SIQ          
Sbjct: 363 LLALNAAIEAARAGDQGRGFAV-VADEVRKLAQRSTESTKEIQEVITSIQTSTRNAVETI 421

Query: 329 DQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAARTSKSTGEIAAVVDKNSQLTASAT 388
           +Q N L+++    A  +G++      +  +V  +  R      +IA  +++ + +T    
Sbjct: 422 EQGNKLSVSCVDNAHLSGDK---LTALLSQVSDITMRNE----QIATAIEEMANVT---E 471

Query: 389 SMMNEVERIAEEGKQQLAEVTAVMGDIRTGAENVAETVS 427
            M   V+ I++   + L        + R  A N+A+  S
Sbjct: 472 DMNRSVQSISDVSTETLGLAENTQNECRQLAHNLAQQTS 510