Pairwise Alignments

Query, 432 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella sp. ANA-3

Subject, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  185 bits (469), Expect = 4e-51
 Identities = 137/518 (26%), Positives = 245/518 (47%), Gaps = 93/518 (17%)

Query: 2   FNSSLRKDLAESETKRREAEAVVDSIKASIATIEFTPDGIILDANPLFLKAVGYSLDEIV 61
           + + L     ES+   +  +A V  I+  +A +E  P+G I  A+  F      S + +V
Sbjct: 47  YQTDLALTTPESDLTPQVNQAFVQVIREHLALLECEPNGTICYASDAFAHLCRVSAEAMV 106

Query: 62  GKHHKLFCAEYYVNTSEYQQFWRELKQGQAKEGKFPRVHKNGQEIWLRATYFPIK-LDGK 120
           G         +       Q+  ++ K+G     +  ++ ++ + IW++A  +PIK ++G+
Sbjct: 107 GADFANLWRTH--QQPSVQRLLQDAKKGHPVSAEL-QLSRSQEAIWIKADLYPIKAINGQ 163

Query: 121 ITKIMKTAAVITEDKYQLDAQAALFSALQKSQAIIEFSPEGNILNANANFLRTMGYSKEQ 180
           +  ++     IT  K +   ++   +A+  +QA+IEF+ +G IL AN NFL+T+GY  ++
Sbjct: 164 LQNVVVLLQDITAAKLEKIDRSGQMNAVNLTQAVIEFTLDGTILTANQNFLQTVGYQLDE 223

Query: 181 LQGKHHRLFCFDNFYQDNP--HFWDDLRRGQYKKGLFQRKNAYGDSIWLEAVYNPVMDDH 238
           +QG+HH +F  + + Q     HFW  LR G++    ++R    G  IW++A YNP+MD  
Sbjct: 224 IQGRHHSMFVDEQYKQSQEYQHFWQRLRSGEFFVDEYKRFGKGGKEIWIQASYNPIMDSE 283

Query: 239 GKVVKVIKFASDITQRIIKSHAIR---------------------DAANIAHATSQ--ST 275
           GK  KV+K+A+++TQR +  + ++                     + A +    SQ   T
Sbjct: 284 GKPYKVVKYATNVTQRKMVVNEVKRVMTALSSGDLSAQLTHPFEGEFAELGEVISQFIVT 343

Query: 276 VEQANRGVQLLDATV--------NTSNAIAAQT-------HKTTESMLKLNEQ------- 313
           + Q    +  + AT+        N +  ++++T        +T  SM +LN         
Sbjct: 344 LRQIITDINSVAATIKLAATEISNGNTDLSSRTEQQASNLEQTASSMEELNSTVRQNSDN 403

Query: 314 ------------------SQSIQAIVATISA-----------------IADQTNLLALNA 338
                              + I+ +V T+++                 IA QTN+LALNA
Sbjct: 404 AMQANILAGKATEIAASGGELIEQVVVTMASINESAQKIADIIGVIDGIAFQTNILALNA 463

Query: 339 AIEAARAGEQGRGFAVVADEVRQLAARTSKSTGEIAAV-------VDKNSQLTASATSMM 391
           A+EAARAGEQGRGF+VVA EVR LA R++ +  +I A+       +   ++L   + S M
Sbjct: 464 AVEAARAGEQGRGFSVVASEVRSLAQRSANAAKDIKALISDSVSKISNGNELVDRSGSTM 523

Query: 392 NEVERIAEEGKQQLAEVTAVMGDIRTGAENVAETVSQL 429
            ++    +     +A++ +   +  TG   V + V+Q+
Sbjct: 524 KDIVVSIKRVHDLMADIASASAEQATGINEVNQAVNQM 561