Pairwise Alignments

Query, 432 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella sp. ANA-3

Subject, 559 a.a., PAS domain-containing methyl-accepting chemotaxis protein from Rhodopseudomonas palustris CGA009

 Score =  251 bits (640), Expect = 5e-71
 Identities = 140/423 (33%), Positives = 238/423 (56%), Gaps = 22/423 (5%)

Query: 24  VDSIKASIATIEFTPDGIILDANPLFLKAVGYSLDEIVGKHHKLFCAEYYVNTSEYQQFW 83
           V +   S A IEF  DG I  AN  FLK +GY+LDEI G+HH +F      +++ Y++FW
Sbjct: 138 VAAANRSQAVIEFNMDGTIRTANENFLKTIGYTLDEIKGEHHNMFVEPADRDSAAYREFW 197

Query: 84  RELKQGQAKEGKFPRVHKNGQEIWLRATYFPIKLD-GKITKIMKTAAVITEDKYQLDAQA 142
             L +G+ +  ++ R+ K G+EIWL+A+Y PI  D G+  K++K A  +TE K +    A
Sbjct: 198 AALNRGEYQAAEYKRIGKGGREIWLQASYNPIFDDKGRPAKVVKFATDVTEQKLRNADMA 257

Query: 143 ALFSALQKSQAIIEFSPEGNILNANANFLRTMGYSKEQLQGKHHRLFCFDNFYQDNPH-- 200
              +A+ KSQA+IEF  +G +L AN NFLR +GYS  +++G+ H +F   +      +  
Sbjct: 258 GQIAAIGKSQAVIEFDMDGTVLTANDNFLRALGYSLAEIKGQPHSMFVDPSERAGAAYRE 317

Query: 201 FWDDLRRGQYKKGLFQRKNAYGDSIWLEAVYNPVMDDHGKVVKVIKFASDITQRIIKSHA 260
           FW  L RG+Y+   ++R    G  ++++A YNP++D +G+  KV+KFA+D+T++++    
Sbjct: 318 FWASLNRGEYQAAEYKRIGKGGREVYIQASYNPILDLNGRPFKVVKFATDVTKQVL---- 373

Query: 261 IRDAANIAHATSQSTVEQANRGVQLLDATVNTSNAIAAQTHKTTESML-----------K 309
               A I +   +  +E    G + L+ +V   ++  A++ +T    +           +
Sbjct: 374 ----ARIGNERVRGMMETVAAGAEELNTSVREISSTMAKSRETAAGAVDRVSNADAQAQR 429

Query: 310 LNEQSQSIQAIVATISAIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAARTSKS 369
           L   +QS+  IV  I+ I  Q NLLALNA IE+ARAGE GRGFAVVA EV+ LA +  ++
Sbjct: 430 LTSAAQSMSGIVELINNITGQINLLALNATIESARAGEAGRGFAVVAAEVKNLANQAKQA 489

Query: 370 TGEIAAVVDKNSQLTASATSMMNEVERIAEEGKQQLAEVTAVMGDIRTGAENVAETVSQL 429
           T +I   +   + ++      +N +++   E  + +    A + +  T    ++ ++ + 
Sbjct: 490 TDKIGEEISSLNSISGDVAMALNAIKQAINEVSEYVTSTAAAVEEQSTVTSEMSSSMQRA 549

Query: 430 SID 432
           +++
Sbjct: 550 AVE 552



 Score =  110 bits (275), Expect = 1e-28
 Identities = 87/299 (29%), Positives = 140/299 (46%), Gaps = 25/299 (8%)

Query: 142 AALFSALQKSQAIIEFSPEGNILNANANFLRTMGYSKEQLQGKHHRLFC--FDNFYQDNP 199
           A   +A  +SQA+IEF+ +G I  AN NFL+T+GY+ ++++G+HH +F    D       
Sbjct: 135 AGQVAAANRSQAVIEFNMDGTIRTANENFLKTIGYTLDEIKGEHHNMFVEPADRDSAAYR 194

Query: 200 HFWDDLRRGQYKKGLFQRKNAYGDSIWLEAVYNPVMDDHGKVVKVIKFASDITQRIIKSH 259
            FW  L RG+Y+   ++R    G  IWL+A YNP+ DD G+  KV+KFA+D+T++ +++ 
Sbjct: 195 EFWAALNRGEYQAAEYKRIGKGGREIWLQASYNPIFDDKGRPAKVVKFATDVTEQKLRNA 254

Query: 260 AIRDAANIAHATSQSTVEQANRGVQLLDATVNTSNAIAAQTHKTTESMLKLNEQSQSIQA 319
            +  A  IA       V + +    +L A  N   A+         S+ ++  Q  S+  
Sbjct: 255 DM--AGQIAAIGKSQAVIEFDMDGTVLTANDNFLRALG-------YSLAEIKGQPHSMFV 305

Query: 320 IVATISAIADQTNLLALN----AAIEAARAGEQGRGFAVVA--DEVRQLAARTSKSTGEI 373
             +  +  A +    +LN     A E  R G+ GR   + A  + +  L  R  K    +
Sbjct: 306 DPSERAGAAYREFWASLNRGEYQAAEYKRIGKGGREVYIQASYNPILDLNGRPFK---VV 362

Query: 374 AAVVDKNSQLTA-----SATSMMNEVERIAEEGKQQLAEVTAVMGDIRTGAENVAETVS 427
               D   Q+ A         MM  V   AEE    + E+++ M   R  A    + VS
Sbjct: 363 KFATDVTKQVLARIGNERVRGMMETVAAGAEELNTSVREISSTMAKSRETAAGAVDRVS 421



 Score = 85.9 bits (211), Expect = 3e-21
 Identities = 44/126 (34%), Positives = 76/126 (60%), Gaps = 1/126 (0%)

Query: 9   DLAESETKRREAEAVVDSIKASIATIEFTPDGIILDANPLFLKAVGYSLDEIVGKHHKLF 68
           D+ E + +  +    + +I  S A IEF  DG +L AN  FL+A+GYSL EI G+ H +F
Sbjct: 245 DVTEQKLRNADMAGQIAAIGKSQAVIEFDMDGTVLTANDNFLRALGYSLAEIKGQPHSMF 304

Query: 69  CAEYYVNTSEYQQFWRELKQGQAKEGKFPRVHKNGQEIWLRATYFPI-KLDGKITKIMKT 127
                   + Y++FW  L +G+ +  ++ R+ K G+E++++A+Y PI  L+G+  K++K 
Sbjct: 305 VDPSERAGAAYREFWASLNRGEYQAAEYKRIGKGGREVYIQASYNPILDLNGRPFKVVKF 364

Query: 128 AAVITE 133
           A  +T+
Sbjct: 365 ATDVTK 370