Pairwise Alignments

Query, 299 a.a., tyrosine recombinase XerC (RefSeq) from Shewanella sp. ANA-3

Subject, 293 a.a., integrase, site-specific recombinase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  161 bits (407), Expect = 2e-44
 Identities = 100/291 (34%), Positives = 161/291 (55%), Gaps = 6/291 (2%)

Query: 9   LQQFETYMQSERQLSAHTVRNYMYELQRGSELLPEGV---DLLNVGREHWQQVLAKLHRK 65
           ++ F  Y++ ER  S  TV  Y  ++++  E   E     D L V  E  ++ +  L  +
Sbjct: 3   IKSFLDYLRYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFDPLEVEGELIREWIVSLMDR 62

Query: 66  GLSPRSLSLWLSAIKQWGEFLLRSGVIELNPAKGLSAPKQAKPLPKNIDVDSISHLLAIE 125
           G +  S++  LS+++ + ++LLR G + ++P + ++ PK  KPLP  +    +  LL   
Sbjct: 63  GYTSTSVNRKLSSLRSFYKYLLRQGEVTVDPLRKITGPKNKKPLPAFLKESEMDKLLDDT 122

Query: 126 --GNDPLTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQHEVRVLGKGNKERIVPVGRY 183
             G      RD+ I+ +FY++G+RL+EL  LD   V +    ++V GK NK+R++P G  
Sbjct: 123 DFGEGFKGCRDRLIIGVFYATGIRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGDE 182

Query: 184 AIEAISAWLKCRKQISCE-DNALFVTEKGKRLSHRSIQARMSKWGQEQALSMRVHPHKLR 242
             E +  ++  R +   E   A FV E G+RL    +   + +   + A   +  PH LR
Sbjct: 183 LKELMLEYINVRNETIPERSEAFFVKEDGERLYKNLVYNLVKRNLSKVATLKKRSPHVLR 242

Query: 243 HSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQHLAKVYDNAHPRA 293
           H+FAT ML + A+L AV+ELLGHE+++TT+IYT   F+ L KVY  AHPRA
Sbjct: 243 HTFATTMLNNDAELGAVKELLGHESVATTEIYTHATFEELKKVYKQAHPRA 293