Pairwise Alignments

Query, 414 a.a., diaminopimelate decarboxylase (RefSeq) from Shewanella sp. ANA-3

Subject, 421 a.a., diaminopimelate decarboxylase LysA from Phaeobacter inhibens DSM 17395

 Score =  385 bits (989), Expect = e-111
 Identities = 206/405 (50%), Positives = 272/405 (67%), Gaps = 5/405 (1%)

Query: 1   MDHFLYQDNTLYAEGCRVNDLAQQYGTPLYIYSRATLERHWHAFNNAVADHPHLVCYAVK 60
           MDHFLY+D  LYAE   V ++A   GTP Y+YS ATL RH++ F++A+    HLVCYA+K
Sbjct: 1   MDHFLYRDGALYAEDVPVAEIAATVGTPFYLYSTATLLRHFNLFDDALKGMDHLVCYAMK 60

Query: 61  ANSNLAVLNVLARLGSGFDIVSGGELARVIEAGGDPAKVVFSGVGKTVAEMEQALNLGIY 120
           A SN A+L  LA+ G+G D+VS GE  R   AG    ++VFSGVGKT  E+  AL+ GI 
Sbjct: 61  AASNQAILKTLAQAGAGMDVVSQGEYLRAKAAGVPGDRIVFSGVGKTQDEIRTALSGGIR 120

Query: 121 CFNVESSAELEQLNDVAGRLGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAMDEAEV 180
            FNVES  E++ +N VA  LG VAP+++RVNPDVDA TH  I+TG  ENKFGI +  A  
Sbjct: 121 QFNVESEPEMDVINAVALELGVVAPITVRVNPDVDAKTHAKIATGKSENKFGIPIARARE 180

Query: 181 VFARAHALPHLQVKGVDCHIGSQLTEIQPFLDAMDRMLALIDRLADQGIVIEHFDVGGGL 240
           V+ARA +LP L+V G+D HIGSQLTE+ PF  A  ++  L ++L   G  I   D+GGGL
Sbjct: 181 VYARAASLPGLKVIGIDVHIGSQLTELAPFELAYQKVAELTEQLRADGHDIHRLDLGGGL 240

Query: 241 GVTY--DDETPPHPDVYAAALLARLGDRKLKLIFEPGRAIAANAGIFVTQVLYLKENSDK 298
           G+ Y   ++TPP P  Y A +   LG    ++  EPGR IA NAGI V++V+Y+K   D+
Sbjct: 241 GIPYTRSNDTPPLPVEYGAMVQRTLGHLGCEIEIEPGRLIAGNAGIMVSKVIYVKSGEDR 300

Query: 299 RFAIVDGAMNDLIRPALYSAWQNIIPV--NPRDEQAQVFDIVGPVCETGDFLGKDRAL-A 355
            F I+DGAMNDLIRPA+Y A+ +I+PV       + + +DIVGPVCETGD   + R +  
Sbjct: 301 DFLIIDGAMNDLIRPAMYEAYHDIVPVIEPSAGVEQRAYDIVGPVCETGDTFARHRDMPP 360

Query: 356 IAAGDLLVVRSSGAYGFAMASNYNTRPRAAEVMVDGDKAYLVRER 400
           + AGDL+  RS+GAYG  MAS YN+RP   EV+V+GD+  ++R R
Sbjct: 361 LEAGDLVAFRSAGAYGAVMASEYNSRPLIPEVLVNGDQFAVIRRR 405