Pairwise Alignments

Query, 446 a.a., preprotein translocase subunit SecY (RefSeq) from Shewanella sp. ANA-3

Subject, 447 a.a., SecY protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  474 bits (1220), Expect = e-138
 Identities = 237/426 (55%), Positives = 313/426 (73%), Gaps = 4/426 (0%)

Query: 16  SELKARLLFVIGAIIVFRAGSFVPIPGIDAAVLAELFAQQKGTILGMFNMFSGGALSRAS 75
           +ELK R+ F + A++V+R G+++P+PGID   +A++F++  G ILGMF+MF+GGALSR +
Sbjct: 21  TELKKRIWFTLAALVVYRVGTYIPLPGIDPQAMADVFSRNGGGILGMFDMFAGGALSRMT 80

Query: 76  IFALGIMPYISASIIMQLLTVVHPALAELKKEGESGRKKISQYTRWGTLVLGTFQSIGIA 135
           IFAL IMPYISASIIMQL+T + P L  LKKEGESGRK+I+QYTR+ T+++   Q+ GIA
Sbjct: 81  IFALNIMPYISASIIMQLMTSISPQLEALKKEGESGRKRINQYTRYLTVLITALQAYGIA 140

Query: 136 TGLPNLVPG---LVVNIGFGFYFVAVVSLVTGTMFLMWLGEQITERGIGNGISILIFAGI 192
            GL ++       V + G  F F  VV+L+ GT+FLMWLGEQIT RG+GNGIS++IF GI
Sbjct: 141 VGLESMTSSSGAAVHDAGMFFRFTTVVTLMGGTLFLMWLGEQITARGVGNGISLIIFTGI 200

Query: 193 VAGLPSAIGQTAEQARQGDLNVLVLLLLAVIIFAVTYFVVFVERGQRRIVVNYAKRQQGR 252
           VA LP A+    E  R G L+  V+L + V+   V  F+VF+ER QRRI++ Y KRQQG 
Sbjct: 201 VAQLPHALVGMLELGRTGALSPAVILGILVLAVGVIAFIVFMERAQRRILIQYPKRQQGN 260

Query: 253 KVFAAQSTHLPLKINMAGVIPPIFASSIILFPGTLAQWFGQNESMSWLSDFSLAVSPGQP 312
           K++  +S+H+PLKIN  GVIPPIFASSI+L P T AQ F   +   WL+  +  +  GQP
Sbjct: 261 KMYGGESSHMPLKINTPGVIPPIFASSILLLPMTAAQ-FSAGQGPEWLTTITTLLGHGQP 319

Query: 313 LYSLLYAAAIIFFCFFYTALVFNPRETADNLKKSGAFIPGIRPGEQTSRYIDKVMTRLTL 372
           LY  LYAA I FF FFYTA+VFNP +TA+NLKK G FIPGIRPG  TS Y+D V+TRLT 
Sbjct: 320 LYMALYAALIAFFAFFYTAVVFNPEDTAENLKKYGGFIPGIRPGRNTSEYLDYVLTRLTA 379

Query: 373 AGALYITFICLIPEFMLIAWKVQFYFGGTSLLIMVVVIMDFMAQVQTHMMSHQYESVMKK 432
            GA+Y+ FI ++PEF++    V FYFGGTSLLI+V V MD +AQ+Q+H+++HQYE ++KK
Sbjct: 380 VGAIYLIFISILPEFLISKVGVPFYFGGTSLLIVVTVTMDTVAQIQSHLLAHQYEGLIKK 439

Query: 433 ANLVNK 438
           + L  K
Sbjct: 440 SKLRGK 445