Pairwise Alignments

Query, 521 a.a., type II secretion system protein E (GspE) (RefSeq) from Shewanella sp. ANA-3

Subject, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

 Score =  656 bits (1693), Expect = 0.0
 Identities = 338/490 (68%), Positives = 400/490 (81%), Gaps = 2/490 (0%)

Query: 33  SKERLPFAFAHRHEVILAYGDD-GALNLFYTAKTPLAAMLEARRYSGADLPLVLLEPGKF 91
           S  RLPF+FA+R +++L + +D    +++Y A   + A++E +R       L+ L   +F
Sbjct: 13  SIRRLPFSFANRFKLVLDWNEDFSQASIYYLAPLSMEALVETKRVVKHAFQLIELSQAEF 72

Query: 92  EAKLTQAYQANSSEAQQLMEDIGNEMD-LFTLAEELPQTEDLLEGDDDAPIIKLINALLS 150
           E+KLTQ YQ +SSEA+QLMEDIG + D  F+LAEELPQ EDLLE +DDAPIIKLINA+L 
Sbjct: 73  ESKLTQVYQRDSSEARQLMEDIGADSDDFFSLAEELPQNEDLLESEDDAPIIKLINAMLG 132

Query: 151 EAIKEEASDIHIETYEKQLVVRFRIDGVLKEVLKPNRKLSSLLVSRIKVMARLDIAEKRV 210
           EAIKE ASDIHIET+EK L +RFR+DGVL+EVL P+RKLSSLLVSR+KVMA+LDIAEKRV
Sbjct: 133 EAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAPSRKLSSLLVSRVKVMAKLDIAEKRV 192

Query: 211 PQDGRISLRIAGRAVDVRVSTMPSSHGERVVLRLLDKNAGNLDLKQLGMTDSIRAQFDEI 270
           PQDGRISLRI GRAVDVRVSTMPSSHGERVV+RLLDKNA  LDL  LGMT      F  +
Sbjct: 193 PQDGRISLRIGGRAVDVRVSTMPSSHGERVVMRLLDKNATRLDLHSLGMTAHNHDNFRRL 252

Query: 271 IRRPHGIILVTGPTGSGKSTTLYAGLTEINSKDTNILTVEDPIEYELEGIGQTQVNTKAD 330
           I+RPHGIILVTGPTGSGKSTTLYAGL E+NS + NILTVEDPIE++++GIGQTQVN + D
Sbjct: 253 IKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVD 312

Query: 331 MTFARGLRAILRQDPDVVMIGEIRDLETAQIAVQASLTGHLVISTLHTNTASGAITRLQD 390
           MTFARGLRAILRQDPDVVM+GEIRDLETAQIAVQASLTGHLV+STLHTNTA GA+TRL+D
Sbjct: 313 MTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRD 372

Query: 391 MGVEPFLVSSSLLGVLAQRLIRTLCPKCKTEHVPDERERELLGMAADDHRHIYRANGCKA 450
           MG+EPFL+SSSLLGVLAQRL+RTLCP CK  +  D+ +R+L      +   +YRA GC  
Sbjct: 373 MGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEADKEQRKLFDSKKKEPLILYRATGCPK 432

Query: 451 CGSSGYRGRTGIHELLLVDDNVRELIHGGRGELAIEKYIRQSVPSIRHDGMSKVLSGITT 510
           C   GYRGRTGIHELLLVDD ++ELIH   GE A+EK+IR + PSIR DG+ KV  GIT+
Sbjct: 433 CNHKGYRGRTGIHELLLVDDALQELIHSEAGEQAMEKHIRATTPSIRDDGLDKVRQGITS 492

Query: 511 LEEVLRVTRE 520
           LEEV+RVT+E
Sbjct: 493 LEEVMRVTKE 502