Pairwise Alignments

Query, 411 a.a., hypothetical protein (NCBI) from Shewanella sp. ANA-3

Subject, 420 a.a., Putative type II restriction enzyme NmeDIP (EC 3.1.21.4) (Endonuclease NmeDIP) (R.NmeDIP) from Acidovorax sp. GW101-3H11

 Score =  317 bits (812), Expect = 4e-91
 Identities = 177/417 (42%), Positives = 256/417 (61%), Gaps = 17/417 (4%)

Query: 4   LIDKYKSDEESVYNTWYINSQERLKAFRSIRRGVLNVIEKIKTKNFGNDFKDSSLEFVLN 63
           LID +K+D  S YN+W++  Q R+K FRSIRRG+  V+E I+   FGN ++ SSLE ++ 
Sbjct: 8   LIDCWKADPSSTYNSWFLWDQ-RIKNFRSIRRGMAQVVEDIRGGTFGNAYRGSSLETIVG 66

Query: 64  CITEQKQVFIGAAHAFYWKPKLRIPDIYENENNQLIFGQFLERCFNAKSEEQLLKEIILL 123
            + EQ+Q+F GA HAF WKPKLRIPDIYEN +NQL F   L  C +    E ++  I  +
Sbjct: 67  SVAEQRQIFKGADHAFLWKPKLRIPDIYENTSNQLAFADLLHTCDHCDCAEDVVAAIQRI 126

Query: 124 EQNKIKGLGPAVANILYFLHPEIMPPFNTVIVNGFNQLFKEKIKLGSWSEYLRMREIILE 183
           +   IKGLGPAVAN+LYF+HP ++ PFNT IVNGFN +   ++KLG W  YL MRE +L 
Sbjct: 127 DAIGIKGLGPAVANLLYFIHPTLLSPFNTAIVNGFNAVTGGRVKLGRWDHYLSMREGLLR 186

Query: 184 KNVQFKQEFSKDLGAIAGFLFEIGSKKIIV------SDDASLSEKELLKIQQSLKKRHNE 237
            N Q++ + S DLGAIAG +F+IGS +         +  A+L +++L +++        E
Sbjct: 187 LNAQYRLKLSNDLGAIAGLMFDIGSGRYAAPPQAMDAATATLWQEDLERVRLESTASQRE 246

Query: 238 VMGDKEEEDLHTEMQYHLLRIGQQLGYEVISASNDRARCHNGNNFSFISLNQFP---DIG 294
           +    E +  HT +Q  L  +G+ LG++V  ASNDR R +         L Q P   D G
Sbjct: 247 MSQATESDATHTGIQASLRDLGKSLGFDVWIASNDRGRSYGSGLLGDGCLAQLPASVDRG 306

Query: 295 LAKETRKTIELIDVVWFEKGTNKITGAFEVEKSTSIYSGILRLTDLHL-SFPEEQASLFI 353
           L     ++I LIDVVW +  T+++  AFEVE +TSIYSGI+R+ DL L +      +LF+
Sbjct: 307 L-----ESIRLIDVVWIDTQTSQVAAAFEVEHTTSIYSGIVRMLDLALGTSVAVNCALFL 361

Query: 354 IIPDNREKDLLFQLNRPAITG-SKVPVKYILFSDLRKHCDAICTFGERKEALYKISK 409
           + PDNR   +  QL RPA +  S++ ++Y+ +S L ++   +  FG   + L +IS+
Sbjct: 362 VAPDNRRDKVAEQLQRPAFSRVSELGIRYLPYSQLEQNHALMSRFGSSIKPLLEISQ 418