Pairwise Alignments

Query, 411 a.a., hypothetical protein (NCBI) from Shewanella sp. ANA-3

Subject, 327 a.a., Putative type II restriction enzyme NmeDIP (EC 3.1.21.4) (Endonuclease NmeDIP) (R.NmeDIP) from Acidovorax sp. GW101-3H11

 Score =  216 bits (549), Expect = 1e-60
 Identities = 121/319 (37%), Positives = 186/319 (58%), Gaps = 10/319 (3%)

Query: 99  IFGQFLERCFNAKSEEQLLKEIILLEQNKIKGLGPAVANILYFLHPEIMPPFNTVIVNGF 158
           +F   L  C +    + ++  I  ++   IKGLGPAVAN+LYF+HP ++ PFNT IV GF
Sbjct: 9   LFADLLHACDHCNCAQDVVAAIQRIDAIGIKGLGPAVANLLYFIHPTLVAPFNTAIVKGF 68

Query: 159 NQLFKEKIKLGSWSEYLRMREIILEKNVQFKQEFSKDLGAIAGFLFEIGSKKIIVSDDA- 217
           N +    +KLG W  YL MRE +L  N Q++ + S DLGAIAG +F++G+ +      A 
Sbjct: 69  NAVAGGGVKLGRWDHYLSMREGLLRLNEQYRLKLSNDLGAIAGLMFDVGAGRYAAPPAAM 128

Query: 218 -----SLSEKELLKIQQSLKKRHNEVMGDKEEEDLHTEMQYHLLRIGQQLGYEVISASND 272
                 L  K+L +++Q       E+   +E +  HT +Q  L  +G+ LG++V  ASND
Sbjct: 129 DGTAIDLWRKDLERVRQESAAMQKELALARESDATHTGVQALLRDLGKALGFDVWIASND 188

Query: 273 RARCHNGNNFSFISLNQFPDIGLAKETRKTIELIDVVWFEKGTNKITGAFEVEKSTSIYS 332
           R R H         ++Q P   +A    +++ LIDVVW +  T+++  AFEVE +TSIYS
Sbjct: 189 RGRVHGSGLLGDGCMDQLP--AMADGGLESVRLIDVVWVDTHTSRVAAAFEVEHTTSIYS 246

Query: 333 GILRLTDLHLSFP-EEQASLFIIIPDNREKDLLFQLNRPAITG-SKVPVKYILFSDLRKH 390
           GI+R+ DL L  P  E+ +LF++ PDNR   +  QL RPA +  S++ ++Y+ +S L +H
Sbjct: 247 GIVRMLDLALGTPVAEKCALFLVAPDNRRDKVAEQLQRPAFSRVSELGIRYLPYSQLEQH 306

Query: 391 CDAICTFGERKEALYKISK 409
             ++  FG   + L +IS+
Sbjct: 307 HASMSRFGSSIKPLLEISQ 325