MetaCyc Pathway: 2-deoxy-D-ribose degradation II in Cupriavidus basilensis FW507-4G11

Add experiment(s):


2-deoxy-β-D-ribopyranose + 2 an oxidized c-type cytochrome→2-deoxy-ribono-1,5-lactone + 2 a reduced c-type cytochrome + 2 H+ (EC 1.1.2.M2)
RR42_RS04000
2-deoxy-ribono-1,5-lactone + H2O→2-deoxy-D-ribonate + H+
No genes
2-deoxy-D-ribonate + NAD+→2-deoxy-3-dehydro-D-ribonate + NADH + H+ (EC 1.1.1.M55)
RR42_RS10315
2-deoxy-3-dehydro-D-ribonate + acetyl-CoA→acetoacetate + D-glyceroyl-CoA
RR42_RS24450
RR42_RS25175
RR42_RS33585
Acetoacetate--CoA ligase:
acetoacetate + ATP + coenzyme A→acetoacetyl-CoA + AMP + diphosphate (EC 6.2.1.16)
RR42_RS10085
RR42_RS15595
RR42_RS16170
RR42_RS16600
RR42_RS18150
RR42_RS26915
RR42_RS29475
RR42_RS36095
D-glyceroyl-CoA + H2O→D-glycerate + coenzyme A + H+
No genes
Acetyl-CoA C-acyltransferase (in reverse):
acetoacetyl-CoA + coenzyme A→2 acetyl-CoA (EC 2.3.1.16; 2.3.1.9)
RR42_RS00885
RR42_RS02515
RR42_RS03010
RR42_RS07610
RR42_RS07645
RR42_RS10260
RR42_RS10540
RR42_RS11085
RR42_RS16595
RR42_RS22625
RR42_RS24300
RR42_RS24970
RR42_RS25210
RR42_RS25380
RR42_RS25455
RR42_RS26090
RR42_RS27160
RR42_RS27235
RR42_RS28055
RR42_RS28390
RR42_RS31890
RR42_RS31920
RR42_RS35915
RR42_RS36320
RR42_RS37020
D-glycerate + ATP→2-phospho-D-glycerate + ADP + H+ (EC 2.7.1.165)
No genes

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information