MetaCyc Pathway: L-arabinose degradation IV in Cupriavidus basilensis FW507-4G11

Add experiment(s):


L-arabinofuranose→L-arabinopyranose (spontaneous)
No genes
α-L-arabinopyranose + NAD(P)+→L-arabinono-1,4-lactone + NAD(P)H + H+ (EC 1.1.1.376)
No genes
L-arabinonolactonase:
L-arabinono-1,4-lactone + H2O→L-arabinonate + H+ (EC 3.1.1.15)
No genes
L-arabinonate dehydratase:
L-arabinonate→2-dehydro-3-deoxy-L-pentonate + H2O (EC 4.2.1.25)
RR42_RS18585
RR42_RS33950
2-dehydro-3-deoxy-L-pentonate aldolase:
2-dehydro-3-deoxy-L-pentonate→glycolaldehyde + pyruvate (EC 4.1.2.18)
No genes
glycolaldehyde + an oxidized electron carrier→glycolate + a reduced two electron carrier + H+
RR42_RS13620
Glyoxylate reductase:
glycolate + NAD+→glyoxylate + NADH + H+ (EC 1.1.1.26)
RR42_RS14190
Malate synthase:
glyoxylate + acetyl-CoA + H2O→(S)-malate + coenzyme A + H+ (EC 2.3.3.9)
RR42_RS12175

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information