MetaCyc Pathway: D-xylose degradation IV in Cupriavidus basilensis FW507-4G11

Add experiment(s):


D-xylopyranose + NAD(P)+→D-xylono-1,5-lactone + NAD(P)H + H+ (EC 1.1.1.359)
No genes
D-xylono-1,5-lactone + H2O→D-xylonate + H+ (EC 3.1.1.110)
RR42_RS30140
Xylonate dehydratase:
D-xylonate→2-dehydro-3-deoxy-D-pentonate + H2O (EC 4.2.1.82)
No genes
2-dehydro-3-deoxy-D-pentonate aldolase:
2-dehydro-3-deoxy-D-pentonate→glycolaldehyde + pyruvate (EC 4.1.2.28)
No genes
glycolaldehyde + an oxidized electron carrier→glycolate + a reduced two electron carrier + H+
RR42_RS13620
Glyoxylate reductase:
glycolate + NAD+→glyoxylate + NADH + H+ (EC 1.1.1.26)
RR42_RS14190
Malate synthase:
glyoxylate + acetyl-CoA + H2O→(S)-malate + coenzyme A + H+ (EC 2.3.3.9)
RR42_RS12175

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information