MetaCyc Pathway: fatty acid β-oxidation V (unsaturated, odd number, di-isomerase-dependent) in Cupriavidus basilensis FW507-4G11

Add experiment(s):


Acyl-CoA oxidase:
a (5Z)-alkan-5-enoyl-CoA + dioxygen→a (2E,5Z)-alka-2,5-dienoyl-CoA + hydrogen peroxide (EC 1.3.3.6)
No genes
Dodecenoyl-CoA isomerase:
a (2E,5Z)-alka-2,5-dienoyl-CoA→a (3E,5Z)-alka-3,5-dienoyl-CoA (EC 5.3.3.8)
RR42_RS02510
RR42_RS10265
RR42_RS11095
RR42_RS22630
RR42_RS28325
RR42_RS29465
RR42_RS35270
a (3E,5Z)-alka-3,5-dienoyl-CoA→a (2E,4E)-2,4-dienoyl-CoA (EC 5.3.3.21)
No genes
a (2E,4E)-2,4-dienoyl-CoA + NADPH + H+→a (3E)-3-enoyl-CoA + NADP+ (EC 1.3.1.124)
No genes
Dodecenoyl-CoA isomerase:
a (3E)-3-enoyl-CoA→a (2E)-2-enoyl-CoA (EC 5.3.3.8)
RR42_RS02510
RR42_RS10265
RR42_RS11095
RR42_RS22630
RR42_RS28325
RR42_RS29465
RR42_RS35270

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information