MetaCyc Pathway: L-lysine degradation X in Cupriavidus basilensis FW507-4G11

Add experiment(s):


Lysine decarboxylase:
L-lysine + H+→cadaverine + CO2 (EC 4.1.1.18)
RR42_RS15940
RR42_RS26025
Putrescine aminotransferase:
cadaverine + 2-oxoglutarate→5-aminopentanal + L-glutamate (EC 2.6.1.82)
No genes
Aminobutyraldehyde dehydrogenase:
5-aminopentanal + NAD+ + H2O→5-aminopentanoate + NADH + 2 H+ (EC 1.2.1.19)
RR42_RS06495
5-aminovalerate transaminase:
5-aminopentanoate + 2-oxoglutarate→glutarate semialdehyde + L-glutamate (EC 2.6.1.48)
No genes
Glutarate-semialdehyde dehydrogenase:
glutarate semialdehyde + NADP+ + H2O→glutarate + NADPH + 2 H+ (EC 1.2.1.20)
RR42_RS21375
RR42_RS21760
RR42_RS24555
Succinate--hydroxymethylglutarate CoA-transferase:
glutarate + succinyl-CoA→glutaryl-CoA + succinate (EC 2.8.3.13)
RR42_RS15155
RR42_RS22690
RR42_RS28400
RR42_RS32705
RR42_RS34915
RR42_RS36540

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information