| Reactions and Genes | Pimelic (C) |
|---|
| remove |
Aspartate transaminase (in reverse):
oxaloacetate + L-glutamate→L-aspartate + 2-oxoglutarate (EC 2.6.1.1) |
| RR42_RS01570 | -0.0 |
| RR42_RS01590 | -0.1 |
| RR42_RS02275 | +0.0 |
| RR42_RS04985 | +0.3 |
| RR42_RS05770 | -0.0 |
| RR42_RS09190 | +0.2 |
| RR42_RS09965 | -0.2 |
| RR42_RS10785 | +0.0 |
| RR42_RS12545 | -1.0 |
| RR42_RS14560 | -0.1 |
| RR42_RS15580 | -0.2 |
| RR42_RS16470 | +0.3 |
| RR42_RS21340 | -0.2 |
| RR42_RS25980 | +0.1 |
| RR42_RS26005 | -0.4 |
| RR42_RS26015 | +0.1 |
| RR42_RS26185 | +0.1 |
| RR42_RS26625 | +0.3 |
| RR42_RS28185 | -0.2 |
| RR42_RS32165 | +0.0 |
| RR42_RS33140 | +0.0 |
| RR42_RS33805 | -0.2 |
| RR42_RS35305 | -0.1 |
| RR42_RS36780 | +0.1 |
Aspartate kinase:
L-aspartate + ATP→L-aspartyl-4-phosphate + ADP (EC 2.7.2.4) |
| RR42_RS06370 | N.D. |
Aspartate-semialdehyde dehydrogenase (in reverse):
L-aspartyl-4-phosphate + NADPH + H+→L-aspartate 4-semialdehyde + NADP+ + phosphate (EC 1.2.1.11) |
| RR42_RS14380 | N.D. |
| L-aspartate 4-semialdehyde + pyruvate→(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H+ + H2O (EC 4.3.3.7) |
| RR42_RS04230 | +0.2 |
| RR42_RS05135 | +0.1 |
| RR42_RS06250 | -2.7 |
| RR42_RS17475 | +0.1 |
| RR42_RS33075 | +0.1 |
Homoserine dehydrogenase (in reverse):
L-aspartate 4-semialdehyde + NAD(P)H + H+→L-homoserine + NAD(P)+ (EC 1.1.1.3) |
| RR42_RS12540 | N.D. |
Homoserine kinase:
L-homoserine + ATP→O-phospho-L-homoserine + ADP + H+ (EC 2.7.1.39) |
| RR42_RS15065 | N.D. |
Homoserine O-succinyltransferase:
L-homoserine + succinyl-CoA→O-succinyl-L-homoserine + coenzyme A (EC 2.3.1.46) |
| No genes |
| (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + NAD(P)H + H+→(S)-2,3,4,5-tetrahydrodipicolinate + NAD(P)+ + H2O (EC 1.17.1.8) |
| RR42_RS17550 | N.D. |
| RR42_RS18515 | -0.1 |
Cystathionine gamma-synthase:
O-succinyl-L-homoserine + L-cysteine→L-cystathionine + H+ + succinate (EC 2.5.1.48) |
| RR42_RS06465 | -1.7 |
| RR42_RS14320 | -3.9 |
| RR42_RS32610 | +0.1 |
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase:
(S)-2,3,4,5-tetrahydrodipicolinate + succinyl-CoA + H2O→N-succinyl-2-amino-6-ketopimelate + coenzyme A (EC 2.3.1.117) |
| RR42_RS11935 | N.D. |
Threonine synthase:
O-phospho-L-homoserine + H2O→L-threonine + phosphate (EC 4.2.3.1) |
| RR42_RS12535 | N.D. |
Cysteine-S-conjugate beta-lyase:
L-cystathionine + H2O→L-homocysteine + ammonium + pyruvate (EC 4.4.1.13) |
| No genes |
Succinyldiaminopimelate transaminase (in reverse):
N-succinyl-2-amino-6-ketopimelate + L-glutamate→N-succinyl-L,L-2,6-diaminopimelate + 2-oxoglutarate (EC 2.6.1.17) |
| RR42_RS04455 | N.D. |
| RR42_RS11930 | -0.1 |
| RR42_RS16955 | N.D. |
5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase:
L-homocysteine + 5-methyltetrahydropteroyl tri-L-glutamate→L-methionine + tetrahydropteroyl tri-L-glutamate (EC 2.1.1.14) |
| RR42_RS30660 | -3.7 |
Methionine synthase:
L-homocysteine + a 5-methyltetrahydrofolate→L-methionine + a tetrahydrofolate (EC 2.1.1.13) |
| RR42_RS00770 | +0.2 |
| RR42_RS00775 | +0.3 |
Succinyl-diaminopimelate desuccinylase:
N-succinyl-L,L-2,6-diaminopimelate + H2O→L,L-diaminopimelate + succinate (EC 3.5.1.18) |
| RR42_RS11950 | N.D. |
| RR42_RS19780 | +0.1 |
Diaminopimelate epimerase:
L,L-diaminopimelate→meso-diaminopimelate (EC 5.1.1.7) |
| RR42_RS01250 | N.D. |
| RR42_RS03375 | -0.4 |
| RR42_RS37405 | -0.2 |
Diaminopimelate decarboxylase:
meso-diaminopimelate + H+→L-lysine + CO2 (EC 4.1.1.20) |
| RR42_RS19050 | N.D. |
Links:
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information