Experiment set5IT008 for Cupriavidus basilensis FW507-4G11

Compare to:

R2A with Lomefloxacin hydrochloride 0.001 mM

Group: stress
Media: R2A + Lomefloxacin hydrochloride (0.001 mM)
Culturing: cupriavidus_4G11_ML11, 24 deep-well microplate; Multitron, Aerobic, at 30 (C), shaken=750 rpm
Growth: about 2.9 generations
By: Mark on 5/13/2015
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate

Specific Phenotypes

For 50 genes in this experiment

For stress Lomefloxacin hydrochloride in Cupriavidus basilensis FW507-4G11

For stress Lomefloxacin hydrochloride across organisms

SEED Subsystems

Subsystem #Specific
DNA-replication 1
DNA repair, bacterial RecFOR pathway 1
Folate Biosynthesis 1
Glycerolipid and Glycerophospholipid Metabolism in Bacteria 1
Phosphate metabolism 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
phospholipid remodeling (phosphatidate, yeast) 2 1 1
palmitoleate biosynthesis III (cyanobacteria) 2 1 1
oleate biosynthesis III (cyanobacteria) 3 2 1
CDP-diacylglycerol biosynthesis II 4 4 1
CDP-diacylglycerol biosynthesis I 4 4 1
CDP-diacylglycerol biosynthesis III 5 3 1
phosphatidate biosynthesis (yeast) 5 3 1
phosphatidylglycerol biosynthesis I 6 6 1
phosphatidylglycerol biosynthesis II 6 6 1
superpathway of phospholipid biosynthesis III (E. coli) 12 10 2
superpathway of stearidonate biosynthesis (cyanobacteria) 6 2 1
palmitoyl ethanolamide biosynthesis 6 2 1
diacylglycerol and triacylglycerol biosynthesis 7 3 1
stigma estolide biosynthesis 7 2 1
anandamide biosynthesis II 8 2 1
anandamide biosynthesis I 12 3 1
superpathway of cardiolipin biosynthesis (bacteria) 13 9 1
superpathway of phospholipid biosynthesis II (plants) 28 10 2
plasmalogen biosynthesis I (aerobic) 16 3 1