Experiment set5IT005 for Cupriavidus basilensis FW507-4G11

Compare to:

R2A with Vancomycin Hydrochloride Hydrate 0.5 mg/ml

Group: stress
Media: R2A + Vancomycin Hydrochloride Hydrate (0.5 mg/ml)
Culturing: cupriavidus_4G11_ML11, 24 deep-well microplate; Multitron, Aerobic, at 30 (C), shaken=750 rpm
Growth: about 3.7 generations
By: Mark on 5/13/2015
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate

Specific Phenotypes

For 11 genes in this experiment

For stress Vancomycin Hydrochloride Hydrate in Cupriavidus basilensis FW507-4G11

For stress Vancomycin Hydrochloride Hydrate across organisms

SEED Subsystems

Subsystem #Specific
Carotenoids 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
epoxysqualene biosynthesis 3 2 2
neurosporene biosynthesis 5 2 2
trans-lycopene biosynthesis I 6 2 2
trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria) 8 3 2
β-carotene biosynthesis (engineered) 8 2 2
lycopadiene biosynthesis 7 1 1
cholesterol biosynthesis II (via 24,25-dihydrolanosterol) 16 2 2
cholesterol biosynthesis I 16 2 2
cholesterol biosynthesis III (via desmosterol) 16 2 2
4,4'-diapolycopenedioate biosynthesis 9 1 1
staphyloxanthin biosynthesis 9 1 1
botryococcenes and methylated squalene biosynthesis 9 1 1
superpathway of carotenoid biosynthesis in plants 22 3 2
superpathway of ergosterol biosynthesis II 26 11 2
superpathway of ergosterol biosynthesis I 26 5 2
hopanoid biosynthesis (bacteria) 14 4 1
superpathway of cholesterol biosynthesis 38 5 2