Experiment set1IT027 for Cupriavidus basilensis FW507-4G11

Compare to:

R2A with Doxycycline hyclate 0.0001 mg/ml

Group: stress
Media: R2A + Doxycycline hyclate (1e-04 mg/ml)
Culturing: cupriavidus_4G11_ML11, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Mark on 3/3/2015
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate
Growth plate: 1176 E5,E6

Specific Phenotypes

For 29 genes in this experiment

For stress Doxycycline hyclate in Cupriavidus basilensis FW507-4G11

For stress Doxycycline hyclate across organisms

SEED Subsystems

Subsystem #Specific
Carotenoids 2
Biflavanoid biosynthesis 1
Conserved gene cluster associated with Met-tRNA formyltransferase 1
Glycerolipid and Glycerophospholipid Metabolism in Bacteria 1
Lipid A modifications 1
Methionine Biosynthesis 1
Methionine Degradation 1
Phosphate metabolism 1
Phosphonate metabolism 1
Purine conversions 1
Quorum Sensing: Autoinducer-2 Synthesis 1
Tannin biosynthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
2-aminoethylphosphonate biosynthesis 3 3 3
S-adenosyl-L-methionine biosynthesis 1 1 1
epoxysqualene biosynthesis 3 2 2
methylphosphonate biosynthesis 4 2 2
leucopelargonidin and leucocyanidin biosynthesis 4 2 2
phospholipid remodeling (phosphatidate, yeast) 2 1 1
diploterol biosynthesis 2 1 1
palmitoleate biosynthesis III (cyanobacteria) 2 1 1
2-aminoethylphosphonate degradation II 2 1 1
neurosporene biosynthesis 5 2 2
S-adenosyl-L-methionine salvage II 3 3 1
L-methionine degradation I (to L-homocysteine) 3 2 1
oleate biosynthesis III (cyanobacteria) 3 2 1
2-aminoethylphosphonate degradation I 3 2 1
trans-lycopene biosynthesis I 6 2 2
alkane biosynthesis I 3 1 1
heptadecane biosynthesis 3 1 1
ethene biosynthesis I (plants) 3 1 1
fosfomycin biosynthesis 7 2 2
guanosine ribonucleotides de novo biosynthesis 4 4 1
gondoate biosynthesis (anaerobic) 4 4 1
CDP-diacylglycerol biosynthesis II 4 4 1
CDP-diacylglycerol biosynthesis I 4 4 1
octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) 12 9 3
S-adenosyl-L-methionine salvage I 4 3 1
inosine 5'-phosphate degradation 4 3 1
fatty acid biosynthesis initiation (mitochondria) 4 2 1
trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria) 8 3 2
β-carotene biosynthesis (engineered) 8 2 2
2'-deoxymugineic acid phytosiderophore biosynthesis 4 1 1
palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) 9 9 2
oleate biosynthesis IV (anaerobic) 14 13 3
palmitate biosynthesis III 29 21 6
fatty acid elongation -- saturated 5 5 1
cis-vaccenate biosynthesis 5 5 1
superpathway of unsaturated fatty acids biosynthesis (E. coli) 20 19 4
superpathway of fatty acid biosynthesis initiation 5 4 1
tetradecanoate biosynthesis (mitochondria) 25 17 5
phosphatidate biosynthesis (yeast) 5 3 1
CDP-diacylglycerol biosynthesis III 5 3 1
superpathway of L-cysteine biosynthesis (mammalian) 5 2 1
leucodelphinidin biosynthesis 5 1 1
palmitate biosynthesis II (type II fatty acid synthase) 31 29 6
superpathway of fatty acids biosynthesis (E. coli) 53 50 10
superpathway of fatty acid biosynthesis I (E. coli) 16 14 3
8-amino-7-oxononanoate biosynthesis I 11 9 2
phosphatidylglycerol biosynthesis I 6 6 1
phosphatidylglycerol biosynthesis II 6 6 1
superpathway of guanosine nucleotides de novo biosynthesis I 6 6 1
superpathway of phospholipid biosynthesis III (E. coli) 12 10 2
stearate biosynthesis II (bacteria and plants) 6 5 1
(5Z)-dodecenoate biosynthesis I 6 5 1
(5Z)-dodecenoate biosynthesis II 6 4 1
stearate biosynthesis IV 6 4 1
palmitoyl ethanolamide biosynthesis 6 2 1
petroselinate biosynthesis 6 2 1
superpathway of stearidonate biosynthesis (cyanobacteria) 6 2 1
rhizocticin A and B biosynthesis 12 2 2
superpathway of fatty acid biosynthesis II (plant) 43 38 7
dehydrophos biosynthesis 13 2 2
odd iso-branched-chain fatty acid biosynthesis 34 24 5
anteiso-branched-chain fatty acid biosynthesis 34 24 5
even iso-branched-chain fatty acid biosynthesis 34 24 5
ureide biosynthesis 7 5 1
diacylglycerol and triacylglycerol biosynthesis 7 3 1
L-cysteine biosynthesis VI (reverse transsulfuration) 7 3 1
hopanoid biosynthesis (bacteria) 14 4 2
stigma estolide biosynthesis 7 2 1
lycopadiene biosynthesis 7 1 1
biotin biosynthesis I 15 13 2
superpathway of guanosine nucleotides de novo biosynthesis II 8 7 1
adenosine nucleotides degradation I 8 5 1
anandamide biosynthesis II 8 2 1
cholesterol biosynthesis III (via desmosterol) 16 2 2
cholesterol biosynthesis II (via 24,25-dihydrolanosterol) 16 2 2
cholesterol biosynthesis I 16 2 2
streptorubin B biosynthesis 34 20 4
superpathway of S-adenosyl-L-methionine biosynthesis 9 7 1
botryococcenes and methylated squalene biosynthesis 9 1 1
staphyloxanthin biosynthesis 9 1 1
4,4'-diapolycopenedioate biosynthesis 9 1 1
FR-900098 and FR-33289 antibiotics biosynthesis 10 1 1
purine nucleotides degradation II (aerobic) 11 8 1
L-methionine salvage cycle III 11 3 1
L-methionine salvage cycle II (plants) 11 2 1
mycobactin biosynthesis 11 2 1
superpathway of carotenoid biosynthesis in plants 22 3 2
purine nucleotides degradation I (plants) 12 7 1
L-methionine salvage cycle I (bacteria and plants) 12 4 1
anandamide biosynthesis I 12 3 1
phosalacine biosynthesis 25 4 2
phosphinothricin tripeptide biosynthesis 25 4 2
superpathway of cardiolipin biosynthesis (bacteria) 13 9 1
superpathway of ergosterol biosynthesis II 26 11 2
superpathway of ergosterol biosynthesis I 26 5 2
superpathway of purine nucleotide salvage 14 12 1
superpathway of phospholipid biosynthesis II (plants) 28 10 2
superpathway of L-methionine salvage and degradation 16 7 1
plasmalogen biosynthesis I (aerobic) 16 3 1
superpathway of purines degradation in plants 18 11 1
superpathway of cholesterol biosynthesis 38 5 2
superpathway of purine nucleotides de novo biosynthesis I 21 21 1
aspartate superpathway 25 23 1
superpathway of purine nucleotides de novo biosynthesis II 26 24 1
superpathway of histidine, purine, and pyrimidine biosynthesis 46 44 1
mycolate biosynthesis 205 26 4
superpathway of mycolate biosynthesis 239 27 4