Experiment set1IT006 for Cupriavidus basilensis FW507-4G11

R2A with Thallium(I) acetate 0.001 mg/ml

Group: stress
Media: R2A + Thallium(I) acetate (0.001 mg/ml)
Culturing: cupriavidus_4G11_ML11, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Mark on 03/03/2015
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate
Growth plate: 1173 D7,D8

Specific Phenotypes

For 5 genes in this experiment

For stress Thallium(I) acetate in Cupriavidus basilensis FW507-4G11

For stress Thallium(I) acetate across organisms

SEED Subsystems

Subsystem	#Specific
Glycine reductase, sarcosine reductase and betaine reductase	1
Heat shock dnaK gene cluster extended	1
Isobutyryl-CoA to Propionyl-CoA Module	1
Thioredoxin-disulfide reductase	1
Valine degradation	1
Wyeosine-MimG Biosynthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Pyrimidine metabolism
• Valine, leucine and isoleucine degradation
• Inositol phosphate metabolism
• Propanoate metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
β-alanine degradation II	2	2	1
β-alanine degradation I	2	1	1
thioredoxin pathway	2	1	1
acrylate degradation I	5	3	1
propanoyl-CoA degradation II	5	3	1
2,4-dinitrotoluene degradation	7	2	1
myo-inositol degradation I	7	1	1
L-valine degradation I	8	6	1
myo-, chiro- and scyllo-inositol degradation	10	1	1