Conservation of cofitness between GFF1826 and GFF3102 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

18 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF1826 Alkylated DNA repair protein AlkB 1.0 GFF3102 [NiFe] hydrogenase nickel incorporation protein HybF 0.52 17
Escherichia coli ECRC100 0.82 OKFHMN_23215 alkB DNA oxidative demethylase AlkB 0.85 OKFHMN_19035 hypA hydrogenase maturation nickel metallochaperone HypA low > 80
Escherichia coli ECRC98 0.82 JDDGAC_27175 alkB DNA oxidative demethylase AlkB 0.85 JDDGAC_22670 hypA hydrogenase maturation nickel metallochaperone HypA low > 86
Escherichia coli ECRC101 0.82 MCAODC_14265 alkB DNA oxidative demethylase AlkB 0.85 MCAODC_09550 hypA hydrogenase maturation nickel metallochaperone HypA low > 87
Escherichia coli ECRC99 0.82 KEDOAH_04970 alkB DNA oxidative demethylase AlkB 0.85 KEDOAH_09110 hypA hydrogenase maturation nickel metallochaperone HypA — —
Escherichia coli ECRC102 0.82 NIAGMN_20980 alkB DNA oxidative demethylase AlkB 0.85 NIAGMN_16800 hypA hydrogenase maturation nickel metallochaperone HypA — —
Escherichia coli BW25113 0.82 b2212 alkB oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions (NCBI) 0.85 b2991 hybF protein involved with the maturation of hydrogenases 1 and 2 (NCBI) low > 76
Escherichia coli Nissle 1917 0.82 ECOLIN_RS26540 DNA oxidative demethylase AlkB 0.85 ECOLIN_RS17235 hydrogenase maturation nickel metallochaperone HypA — —
Escherichia coli BL21 0.82 ECD_02139 oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions 0.85 ECD_02867 protein involved with the maturation of hydrogenases 1 and 2 0.23 30
Escherichia fergusonii Becca 0.82 EFB2_01643 Alpha-ketoglutarate-dependent dioxygenase AlkB 0.85 EFB2_00816 Hydrogenase maturation factor HybF low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.81 OHPLBJKB_01498 Alpha-ketoglutarate-dependent dioxygenase AlkB 0.85 OHPLBJKB_00708 Hydrogenase maturation factor HybF low > 73
Escherichia coli ECOR27 0.81 NOLOHH_14790 alkB DNA oxidative demethylase AlkB 0.85 NOLOHH_10810 hypA hydrogenase maturation nickel metallochaperone HypA low > 75
Escherichia coli ECRC62 0.81 BNILDI_13710 alkB DNA oxidative demethylase AlkB 0.85 BNILDI_00705 hypA hydrogenase maturation nickel metallochaperone HypA low > 75
Escherichia coli ECOR38 0.80 HEPCGN_22480 alkB DNA oxidative demethylase AlkB 0.85 HEPCGN_17895 hypA hydrogenase maturation nickel metallochaperone HypA low > 87
Dickeya dianthicola ME23 0.59 DZA65_RS04440 DNA oxidative demethylase AlkB 0.68 DZA65_RS14875 hydrogenase maturation nickel metallochaperone HypA low > 75
Dickeya dadantii 3937 0.59 DDA3937_RS04560 DNA oxidative demethylase AlkB 0.68 DDA3937_RS14225 hydrogenase maturation nickel metallochaperone HypA low > 74
Dickeya dianthicola 67-19 0.56 HGI48_RS04520 DNA oxidative demethylase AlkB 0.68 HGI48_RS14200 hydrogenase maturation nickel metallochaperone HypA low > 71
Rhodopseudomonas palustris CGA009 0.56 TX73_008860 DNA oxidative demethylase AlkB 0.45 TX73_005010 hydrogenase maturation nickel metallochaperone HypA low > 86
Variovorax sp. OAS795 0.50 ABID97_RS24835 DNA oxidative demethylase AlkB 0.36 ABID97_RS13630 hydrogenase maturation nickel metallochaperone HypA — —

Not shown: 40 genomes with orthologs for GFF1826 only; 10 genomes with orthologs for GFF3102 only