Experiment: m.b. L-Lysine 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3268 and Dshi_3269 overlap by 4 nucleotides Dshi_3269 and Dshi_3270 are separated by 54 nucleotides Dshi_3270 and Dshi_3271 are separated by 151 nucleotides
Dshi_3268: Dshi_3268 - coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein (RefSeq), at 3,432,733 to 3,433,962
_3268
Dshi_3269: Dshi_3269 - L-carnitine dehydratase/bile acid-inducible protein F (RefSeq), at 3,433,959 to 3,435,065
_3269
Dshi_3270: Dshi_3270 - putative transcriptional regulator, Crp/Fnr family (RefSeq), at 3,435,120 to 3,435,839
_3270
Dshi_3271: Dshi_3271 - protein of unknown function DUF59 (RefSeq), at 3,435,991 to 3,437,064
_3271
Position (kb)
3433
3434
3435
3436 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3432.980 kb on + strand, within Dshi_3268 at 3432.980 kb on + strand, within Dshi_3268 at 3433.053 kb on + strand, within Dshi_3268 at 3433.060 kb on + strand, within Dshi_3268 at 3433.074 kb on + strand, within Dshi_3268 at 3433.081 kb on - strand, within Dshi_3268 at 3433.161 kb on - strand, within Dshi_3268 at 3433.222 kb on - strand, within Dshi_3268 at 3433.243 kb on + strand, within Dshi_3268 at 3433.250 kb on - strand, within Dshi_3268 at 3433.251 kb on - strand, within Dshi_3268 at 3433.270 kb on + strand, within Dshi_3268 at 3433.287 kb on + strand, within Dshi_3268 at 3433.287 kb on + strand, within Dshi_3268 at 3433.328 kb on - strand, within Dshi_3268 at 3433.526 kb on + strand, within Dshi_3268 at 3433.681 kb on + strand, within Dshi_3268 at 3433.689 kb on - strand, within Dshi_3268 at 3433.725 kb on + strand, within Dshi_3268 at 3433.734 kb on + strand, within Dshi_3268 at 3433.818 kb on + strand, within Dshi_3268 at 3433.851 kb on - strand at 3433.931 kb on + strand at 3434.063 kb on + strand at 3434.107 kb on - strand, within Dshi_3269 at 3434.107 kb on - strand, within Dshi_3269 at 3434.125 kb on - strand, within Dshi_3269 at 3434.214 kb on + strand, within Dshi_3269 at 3434.300 kb on - strand, within Dshi_3269 at 3434.365 kb on + strand, within Dshi_3269 at 3434.399 kb on - strand at 3434.545 kb on + strand, within Dshi_3269 at 3434.561 kb on + strand, within Dshi_3269 at 3434.602 kb on - strand, within Dshi_3269 at 3434.609 kb on + strand, within Dshi_3269 at 3434.665 kb on + strand, within Dshi_3269 at 3434.665 kb on + strand, within Dshi_3269 at 3434.673 kb on - strand, within Dshi_3269 at 3434.673 kb on - strand, within Dshi_3269 at 3434.708 kb on - strand, within Dshi_3269 at 3434.735 kb on + strand, within Dshi_3269 at 3434.820 kb on - strand, within Dshi_3269 at 3434.821 kb on - strand, within Dshi_3269 at 3434.932 kb on - strand, within Dshi_3269 at 3434.965 kb on - strand at 3434.987 kb on - strand at 3435.088 kb on - strand at 3435.231 kb on + strand, within Dshi_3270 at 3435.260 kb on + strand, within Dshi_3270 at 3435.323 kb on - strand, within Dshi_3270 at 3435.329 kb on - strand, within Dshi_3270 at 3435.400 kb on - strand, within Dshi_3270 at 3435.413 kb on + strand, within Dshi_3270 at 3435.413 kb on + strand, within Dshi_3270 at 3435.413 kb on + strand, within Dshi_3270 at 3435.421 kb on - strand, within Dshi_3270 at 3435.456 kb on - strand, within Dshi_3270 at 3435.458 kb on + strand, within Dshi_3270 at 3435.458 kb on + strand, within Dshi_3270 at 3435.458 kb on + strand, within Dshi_3270 at 3435.514 kb on - strand, within Dshi_3270 at 3435.548 kb on - strand, within Dshi_3270 at 3435.561 kb on - strand, within Dshi_3270 at 3435.617 kb on - strand, within Dshi_3270 at 3435.617 kb on - strand, within Dshi_3270 at 3435.736 kb on - strand, within Dshi_3270 at 3435.743 kb on + strand, within Dshi_3270 at 3435.758 kb on + strand, within Dshi_3270 at 3435.763 kb on + strand, within Dshi_3270 at 3435.766 kb on - strand, within Dshi_3270 at 3435.799 kb on + strand at 3435.806 kb on - strand at 3435.817 kb on + strand at 3435.819 kb on - strand at 3435.819 kb on - strand at 3435.823 kb on + strand at 3435.823 kb on + strand at 3435.823 kb on + strand at 3435.824 kb on - strand at 3435.831 kb on - strand at 3435.904 kb on + strand at 3435.918 kb on - strand at 3435.964 kb on + strand at 3435.966 kb on + strand at 3435.974 kb on - strand at 3435.974 kb on - strand at 3435.974 kb on - strand at 3435.974 kb on - strand at 3436.012 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. L-Lysine 200 mM remove 3,432,980 + Dshi_3268 0.20 +0.7 3,432,980 + Dshi_3268 0.20 +0.3 3,433,053 + Dshi_3268 0.26 -0.9 3,433,060 + Dshi_3268 0.27 -0.4 3,433,074 + Dshi_3268 0.28 +1.0 3,433,081 - Dshi_3268 0.28 +0.3 3,433,161 - Dshi_3268 0.35 +0.2 3,433,222 - Dshi_3268 0.40 +1.1 3,433,243 + Dshi_3268 0.41 +0.7 3,433,250 - Dshi_3268 0.42 +0.3 3,433,251 - Dshi_3268 0.42 -0.7 3,433,270 + Dshi_3268 0.44 -1.3 3,433,287 + Dshi_3268 0.45 -0.3 3,433,287 + Dshi_3268 0.45 -1.2 3,433,328 - Dshi_3268 0.48 +0.9 3,433,526 + Dshi_3268 0.64 -0.0 3,433,681 + Dshi_3268 0.77 -0.5 3,433,689 - Dshi_3268 0.78 +3.0 3,433,725 + Dshi_3268 0.81 -0.7 3,433,734 + Dshi_3268 0.81 -2.3 3,433,818 + Dshi_3268 0.88 -1.0 3,433,851 - -0.6 3,433,931 + +1.2 3,434,063 + -0.7 3,434,107 - Dshi_3269 0.13 +0.8 3,434,107 - Dshi_3269 0.13 -0.0 3,434,125 - Dshi_3269 0.15 -1.6 3,434,214 + Dshi_3269 0.23 -1.0 3,434,300 - Dshi_3269 0.31 +0.3 3,434,365 + Dshi_3269 0.37 +0.4 3,434,399 - +1.4 3,434,545 + Dshi_3269 0.53 -0.5 3,434,561 + Dshi_3269 0.54 +0.7 3,434,602 - Dshi_3269 0.58 -0.9 3,434,609 + Dshi_3269 0.59 -0.6 3,434,665 + Dshi_3269 0.64 +0.5 3,434,665 + Dshi_3269 0.64 +0.8 3,434,673 - Dshi_3269 0.64 -0.3 3,434,673 - Dshi_3269 0.64 +0.7 3,434,708 - Dshi_3269 0.68 -1.9 3,434,735 + Dshi_3269 0.70 +1.0 3,434,820 - Dshi_3269 0.78 +0.6 3,434,821 - Dshi_3269 0.78 -1.2 3,434,932 - Dshi_3269 0.88 -0.1 3,434,965 - +1.0 3,434,987 - +1.7 3,435,088 - -0.0 3,435,231 + Dshi_3270 0.15 +0.3 3,435,260 + Dshi_3270 0.19 +0.3 3,435,323 - Dshi_3270 0.28 -0.1 3,435,329 - Dshi_3270 0.29 +0.8 3,435,400 - Dshi_3270 0.39 +0.8 3,435,413 + Dshi_3270 0.41 -0.4 3,435,413 + Dshi_3270 0.41 -0.7 3,435,413 + Dshi_3270 0.41 +0.5 3,435,421 - Dshi_3270 0.42 +0.4 3,435,456 - Dshi_3270 0.47 -1.9 3,435,458 + Dshi_3270 0.47 -0.0 3,435,458 + Dshi_3270 0.47 -0.5 3,435,458 + Dshi_3270 0.47 -0.7 3,435,514 - Dshi_3270 0.55 -0.4 3,435,548 - Dshi_3270 0.59 -0.7 3,435,561 - Dshi_3270 0.61 +0.6 3,435,617 - Dshi_3270 0.69 +0.2 3,435,617 - Dshi_3270 0.69 -0.5 3,435,736 - Dshi_3270 0.86 -1.5 3,435,743 + Dshi_3270 0.87 +0.4 3,435,758 + Dshi_3270 0.89 +0.7 3,435,763 + Dshi_3270 0.89 -1.2 3,435,766 - Dshi_3270 0.90 -0.4 3,435,799 + +0.1 3,435,806 - +1.0 3,435,817 + +2.0 3,435,819 - -2.1 3,435,819 - +0.0 3,435,823 + +0.1 3,435,823 + +3.0 3,435,823 + +1.0 3,435,824 - +1.0 3,435,831 - +0.1 3,435,904 + +0.1 3,435,918 - -2.7 3,435,964 + -0.4 3,435,966 + -1.3 3,435,974 - -0.4 3,435,974 - -2.2 3,435,974 - +0.6 3,435,974 - +1.0 3,436,012 + +1.4
Or see this region's nucleotide sequence