Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2385

Experiment: m.b. L-Lysine 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2383 and Dshi_2384 are separated by 9 nucleotidesDshi_2384 and Dshi_2385 are separated by 407 nucleotidesDshi_2385 and Dshi_2386 are separated by 71 nucleotidesDshi_2386 and Dshi_2387 are separated by 166 nucleotides Dshi_2383: Dshi_2383 - Cytochrome c oxidase subunit I type (RefSeq), at 2,517,133 to 2,518,809 _2383 Dshi_2384: Dshi_2384 - integral membrane protein-like protein (RefSeq), at 2,518,819 to 2,519,340 _2384 Dshi_2385: Dshi_2385 - transcriptional regulator, TraR/DksA family (RefSeq), at 2,519,748 to 2,520,101 _2385 Dshi_2386: Dshi_2386 - GatB/YqeY (RefSeq), at 2,520,173 to 2,520,634 _2386 Dshi_2387: Dshi_2387 - carbamoyl-phosphate synthase, small subunit (RefSeq), at 2,520,801 to 2,521,970 _2387 Position (kb) 2519 2520 2521Strain fitness (log2 ratio) -1 0 1 2 3 4at 2519.245 kb on - strand, within Dshi_2384at 2519.250 kb on + strand, within Dshi_2384at 2519.511 kb on + strandat 2519.519 kb on - strandat 2519.519 kb on - strandat 2519.583 kb on - strandat 2519.583 kb on - strandat 2519.867 kb on - strand, within Dshi_2385at 2520.706 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. L-Lysine 200 mM
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2,519,245 - Dshi_2384 0.82 -0.7
2,519,250 + Dshi_2384 0.83 -1.0
2,519,511 + -0.3
2,519,519 - +4.2
2,519,519 - -0.7
2,519,583 - -0.2
2,519,583 - -0.2
2,519,867 - Dshi_2385 0.34 -1.3
2,520,706 + +0.3

Or see this region's nucleotide sequence