Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1687

Experiment: m.b. L-Lysine 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1685 and Dshi_1686 are separated by 10 nucleotidesDshi_1686 and Dshi_1687 are separated by 127 nucleotidesDshi_1687 and Dshi_1688 are separated by 189 nucleotidesDshi_1688 and Dshi_1689 overlap by 4 nucleotides Dshi_1685: Dshi_1685 - Radical SAM domain protein (RefSeq), at 1,754,813 to 1,755,757 _1685 Dshi_1686: Dshi_1686 - transglutaminase domain protein (RefSeq), at 1,755,768 to 1,756,544 _1686 Dshi_1687: Dshi_1687 - HNH endonuclease (RefSeq), at 1,756,672 to 1,757,268 _1687 Dshi_1688: Dshi_1688 - phospholipase/Carboxylesterase (RefSeq), at 1,757,458 to 1,758,129 _1688 Dshi_1689: Dshi_1689 - HhH-GPD family protein (RefSeq), at 1,758,126 to 1,758,758 _1689 Position (kb) 1756 1757 1758Strain fitness (log2 ratio) -2 -1 0 1 2at 1755.728 kb on + strandat 1755.856 kb on + strand, within Dshi_1686at 1755.925 kb on + strand, within Dshi_1686at 1756.017 kb on - strand, within Dshi_1686at 1756.161 kb on - strand, within Dshi_1686at 1756.182 kb on - strand, within Dshi_1686at 1756.323 kb on - strand, within Dshi_1686at 1756.323 kb on - strand, within Dshi_1686at 1756.334 kb on + strand, within Dshi_1686at 1756.352 kb on - strand, within Dshi_1686at 1756.492 kb on + strandat 1756.539 kb on - strandat 1756.723 kb on - strandat 1756.791 kb on + strand, within Dshi_1687at 1756.795 kb on - strand, within Dshi_1687at 1756.805 kb on + strand, within Dshi_1687at 1756.811 kb on - strand, within Dshi_1687at 1756.895 kb on - strand, within Dshi_1687at 1756.897 kb on + strand, within Dshi_1687at 1756.926 kb on - strand, within Dshi_1687at 1757.007 kb on - strand, within Dshi_1687at 1757.071 kb on - strand, within Dshi_1687at 1757.129 kb on - strand, within Dshi_1687at 1757.360 kb on + strandat 1758.111 kb on + strandat 1758.227 kb on + strand, within Dshi_1689

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. L-Lysine 200 mM
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1,755,728 + -0.5
1,755,856 + Dshi_1686 0.11 -0.8
1,755,925 + Dshi_1686 0.20 +1.5
1,756,017 - Dshi_1686 0.32 -0.3
1,756,161 - Dshi_1686 0.51 +0.4
1,756,182 - Dshi_1686 0.53 +0.6
1,756,323 - Dshi_1686 0.71 -0.8
1,756,323 - Dshi_1686 0.71 -0.5
1,756,334 + Dshi_1686 0.73 +1.5
1,756,352 - Dshi_1686 0.75 +0.1
1,756,492 + +1.0
1,756,539 - -0.6
1,756,723 - -0.6
1,756,791 + Dshi_1687 0.20 +0.6
1,756,795 - Dshi_1687 0.21 -2.1
1,756,805 + Dshi_1687 0.22 -2.2
1,756,811 - Dshi_1687 0.23 +1.2
1,756,895 - Dshi_1687 0.37 +0.1
1,756,897 + Dshi_1687 0.38 -0.3
1,756,926 - Dshi_1687 0.43 +0.3
1,757,007 - Dshi_1687 0.56 -0.5
1,757,071 - Dshi_1687 0.67 +0.5
1,757,129 - Dshi_1687 0.77 +0.8
1,757,360 + +0.8
1,758,111 + +1.9
1,758,227 + Dshi_1689 0.16 -0.4

Or see this region's nucleotide sequence