Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1602

Experiment: m.b. L-Lysine 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1600 and Dshi_1601 are separated by 146 nucleotidesDshi_1601 and Dshi_1602 are separated by 4 nucleotidesDshi_1602 and Dshi_1603 are separated by 225 nucleotidesDshi_1603 and Dshi_1604 are separated by 56 nucleotides Dshi_1600: Dshi_1600 - Antibiotic biosynthesis monooxygenase (RefSeq), at 1,665,720 to 1,666,031 _1600 Dshi_1601: Dshi_1601 - ribosomal protein S9 (RefSeq), at 1,666,178 to 1,666,672 _1601 Dshi_1602: Dshi_1602 - ribosomal protein L13 (RefSeq), at 1,666,677 to 1,667,135 _1602 Dshi_1603: Dshi_1603 - thioesterase superfamily protein (RefSeq), at 1,667,361 to 1,667,783 _1603 Dshi_1604: Dshi_1604 - Enoyl-CoA hydratase/isomerase (RefSeq), at 1,667,840 to 1,668,634 _1604 Position (kb) 1666 1667 1668Strain fitness (log2 ratio) -2 -1 0 1at 1665.798 kb on + strand, within Dshi_1600at 1665.932 kb on + strand, within Dshi_1600at 1666.021 kb on - strandat 1667.393 kb on - strandat 1667.408 kb on - strand, within Dshi_1603at 1667.410 kb on + strand, within Dshi_1603at 1667.455 kb on - strand, within Dshi_1603at 1667.455 kb on - strand, within Dshi_1603at 1667.455 kb on - strand, within Dshi_1603at 1667.455 kb on - strand, within Dshi_1603at 1667.560 kb on + strand, within Dshi_1603at 1667.568 kb on - strand, within Dshi_1603at 1667.687 kb on - strand, within Dshi_1603at 1667.733 kb on + strand, within Dshi_1603at 1667.806 kb on + strandat 1667.851 kb on - strandat 1667.893 kb on - strandat 1667.894 kb on - strandat 1667.908 kb on - strandat 1667.918 kb on - strandat 1667.958 kb on + strand, within Dshi_1604at 1668.046 kb on + strand, within Dshi_1604at 1668.046 kb on + strand, within Dshi_1604at 1668.053 kb on + strand, within Dshi_1604at 1668.106 kb on - strand, within Dshi_1604

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. L-Lysine 200 mM
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1,665,798 + Dshi_1600 0.25 -2.4
1,665,932 + Dshi_1600 0.68 -0.1
1,666,021 - +0.0
1,667,393 - +0.6
1,667,408 - Dshi_1603 0.11 +0.6
1,667,410 + Dshi_1603 0.12 +0.7
1,667,455 - Dshi_1603 0.22 +0.3
1,667,455 - Dshi_1603 0.22 +0.8
1,667,455 - Dshi_1603 0.22 -0.6
1,667,455 - Dshi_1603 0.22 -0.4
1,667,560 + Dshi_1603 0.47 +0.9
1,667,568 - Dshi_1603 0.49 +0.2
1,667,687 - Dshi_1603 0.77 -0.6
1,667,733 + Dshi_1603 0.88 +0.0
1,667,806 + +0.4
1,667,851 - +0.9
1,667,893 - +0.3
1,667,894 - -0.0
1,667,908 - +0.3
1,667,918 - +0.0
1,667,958 + Dshi_1604 0.15 -0.1
1,668,046 + Dshi_1604 0.26 +0.7
1,668,046 + Dshi_1604 0.26 -0.6
1,668,053 + Dshi_1604 0.27 +1.1
1,668,106 - Dshi_1604 0.33 -0.2

Or see this region's nucleotide sequence