Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1551

Experiment: m.b. L-Lysine 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1550 and Dshi_1551 overlap by 4 nucleotidesDshi_1551 and Dshi_1552 are separated by 174 nucleotides Dshi_1550: Dshi_1550 - transcriptional regulator, LuxR family (RefSeq), at 1,613,091 to 1,613,873 _1550 Dshi_1551: Dshi_1551 - 3-dehydroquinate dehydratase, type II (RefSeq), at 1,613,870 to 1,614,322 _1551 Dshi_1552: Dshi_1552 - type III effector Hrp-dependent outers (RefSeq), at 1,614,497 to 1,615,753 _1552 Position (kb) 1613 1614 1615Strain fitness (log2 ratio) -2 -1 0 1 2at 1613.139 kb on + strandat 1613.151 kb on - strandat 1613.271 kb on + strand, within Dshi_1550at 1613.279 kb on - strand, within Dshi_1550at 1613.279 kb on - strand, within Dshi_1550at 1613.334 kb on - strand, within Dshi_1550at 1613.339 kb on + strand, within Dshi_1550at 1613.360 kb on + strand, within Dshi_1550at 1613.434 kb on - strand, within Dshi_1550at 1613.665 kb on + strand, within Dshi_1550at 1613.665 kb on - strand, within Dshi_1550at 1613.826 kb on - strandat 1613.848 kb on + strandat 1613.869 kb on + strandat 1614.453 kb on + strandat 1614.463 kb on - strandat 1614.506 kb on + strandat 1614.597 kb on - strandat 1614.698 kb on + strand, within Dshi_1552at 1614.964 kb on - strand, within Dshi_1552at 1615.203 kb on - strand, within Dshi_1552

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. L-Lysine 200 mM
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1,613,139 + -0.2
1,613,151 - +0.2
1,613,271 + Dshi_1550 0.23 -0.6
1,613,279 - Dshi_1550 0.24 +0.6
1,613,279 - Dshi_1550 0.24 -1.4
1,613,334 - Dshi_1550 0.31 -0.5
1,613,339 + Dshi_1550 0.32 -0.8
1,613,360 + Dshi_1550 0.34 +0.2
1,613,434 - Dshi_1550 0.44 -0.4
1,613,665 + Dshi_1550 0.73 +1.0
1,613,665 - Dshi_1550 0.73 -2.1
1,613,826 - -0.7
1,613,848 + -0.8
1,613,869 + +0.4
1,614,453 + -1.3
1,614,463 - +2.6
1,614,506 + +0.3
1,614,597 - -0.2
1,614,698 + Dshi_1552 0.16 -2.0
1,614,964 - Dshi_1552 0.37 +1.6
1,615,203 - Dshi_1552 0.56 +1.6

Or see this region's nucleotide sequence