Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1489

Experiment: m.b. L-Lysine 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1488 and Dshi_1489 are separated by 10 nucleotidesDshi_1489 and Dshi_1490 are separated by 95 nucleotides Dshi_1488: Dshi_1488 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,546,583 to 1,547,743 _1488 Dshi_1489: Dshi_1489 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,547,754 to 1,548,845 _1489 Dshi_1490: Dshi_1490 - extracellular solute-binding protein family 5 (RefSeq), at 1,548,941 to 1,550,608 _1490 Position (kb) 1547 1548 1549Strain fitness (log2 ratio) -2 -1 0 1at 1546.770 kb on + strand, within Dshi_1488at 1546.780 kb on + strand, within Dshi_1488at 1547.052 kb on - strand, within Dshi_1488at 1547.473 kb on - strand, within Dshi_1488at 1547.664 kb on - strandat 1547.942 kb on - strand, within Dshi_1489at 1548.048 kb on - strand, within Dshi_1489at 1548.048 kb on - strand, within Dshi_1489at 1548.097 kb on + strand, within Dshi_1489at 1548.152 kb on + strand, within Dshi_1489at 1548.199 kb on + strand, within Dshi_1489at 1548.618 kb on + strand, within Dshi_1489at 1548.809 kb on - strandat 1549.088 kb on + strandat 1549.557 kb on + strand, within Dshi_1490at 1549.581 kb on + strand, within Dshi_1490at 1549.617 kb on + strand, within Dshi_1490

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. L-Lysine 200 mM
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1,546,770 + Dshi_1488 0.16 -0.6
1,546,780 + Dshi_1488 0.17 +0.9
1,547,052 - Dshi_1488 0.40 +0.1
1,547,473 - Dshi_1488 0.77 -0.5
1,547,664 - -2.1
1,547,942 - Dshi_1489 0.17 -1.0
1,548,048 - Dshi_1489 0.27 +0.7
1,548,048 - Dshi_1489 0.27 -0.7
1,548,097 + Dshi_1489 0.31 -1.5
1,548,152 + Dshi_1489 0.36 -1.1
1,548,199 + Dshi_1489 0.41 +0.0
1,548,618 + Dshi_1489 0.79 -0.7
1,548,809 - -0.4
1,549,088 + +0.3
1,549,557 + Dshi_1490 0.37 -1.4
1,549,581 + Dshi_1490 0.38 -1.6
1,549,617 + Dshi_1490 0.41 +1.0

Or see this region's nucleotide sequence