Experiment: m.b. L-Lysine 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0868 and Dshi_0869 are separated by 11 nucleotides Dshi_0869 and Dshi_0870 are separated by 11 nucleotides Dshi_0870 and Dshi_0871 are separated by 73 nucleotides Dshi_0871 and Dshi_0872 are separated by 86 nucleotides
Dshi_0868: Dshi_0868 - putative peptidase (RefSeq), at 883,631 to 885,007
_0868
Dshi_0869: Dshi_0869 - hypothetical protein (RefSeq), at 885,019 to 885,909
_0869
Dshi_0870: Dshi_0870 - transcriptional regulator, SARP family (RefSeq), at 885,921 to 887,960
_0870
Dshi_0871: Dshi_0871 - hypothetical protein (RefSeq), at 888,034 to 888,300
_0871
Dshi_0872: Dshi_0872 - extracellular solute-binding protein family 5 (RefSeq), at 888,387 to 889,970
_0872
Position (kb)
885
886
887
888 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 884.960 kb on + strand at 885.129 kb on - strand, within Dshi_0869 at 885.130 kb on - strand, within Dshi_0869 at 885.141 kb on + strand, within Dshi_0869 at 885.226 kb on + strand, within Dshi_0869 at 885.238 kb on + strand, within Dshi_0869 at 885.306 kb on + strand, within Dshi_0869 at 885.564 kb on - strand, within Dshi_0869 at 885.569 kb on - strand, within Dshi_0869 at 885.611 kb on + strand, within Dshi_0869 at 885.753 kb on - strand, within Dshi_0869 at 885.774 kb on - strand, within Dshi_0869 at 885.774 kb on - strand, within Dshi_0869 at 885.913 kb on - strand at 885.953 kb on - strand at 886.001 kb on + strand at 886.009 kb on - strand at 886.058 kb on - strand at 886.077 kb on - strand at 886.081 kb on + strand at 886.087 kb on - strand at 886.249 kb on - strand, within Dshi_0870 at 886.264 kb on + strand, within Dshi_0870 at 886.273 kb on + strand, within Dshi_0870 at 886.505 kb on - strand, within Dshi_0870 at 886.531 kb on - strand, within Dshi_0870 at 886.531 kb on - strand, within Dshi_0870 at 886.532 kb on - strand, within Dshi_0870 at 886.550 kb on + strand, within Dshi_0870 at 886.563 kb on - strand, within Dshi_0870 at 886.622 kb on - strand, within Dshi_0870 at 886.632 kb on - strand, within Dshi_0870 at 886.634 kb on + strand, within Dshi_0870 at 886.767 kb on - strand, within Dshi_0870 at 886.790 kb on + strand, within Dshi_0870 at 886.800 kb on + strand, within Dshi_0870 at 886.808 kb on - strand, within Dshi_0870 at 886.808 kb on - strand, within Dshi_0870 at 886.810 kb on + strand, within Dshi_0870 at 886.870 kb on - strand, within Dshi_0870 at 886.871 kb on - strand, within Dshi_0870 at 886.888 kb on - strand, within Dshi_0870 at 886.888 kb on - strand, within Dshi_0870 at 886.888 kb on - strand at 886.899 kb on + strand, within Dshi_0870 at 886.942 kb on - strand, within Dshi_0870 at 886.943 kb on - strand, within Dshi_0870 at 886.963 kb on - strand, within Dshi_0870 at 887.055 kb on - strand, within Dshi_0870 at 887.057 kb on + strand, within Dshi_0870 at 887.057 kb on + strand, within Dshi_0870 at 887.088 kb on + strand, within Dshi_0870 at 887.088 kb on + strand, within Dshi_0870 at 887.091 kb on - strand, within Dshi_0870 at 887.096 kb on - strand, within Dshi_0870 at 887.096 kb on - strand, within Dshi_0870 at 887.117 kb on + strand, within Dshi_0870 at 887.152 kb on - strand, within Dshi_0870 at 887.156 kb on + strand, within Dshi_0870 at 887.202 kb on + strand, within Dshi_0870 at 887.276 kb on + strand, within Dshi_0870 at 887.320 kb on - strand, within Dshi_0870 at 887.362 kb on + strand, within Dshi_0870 at 887.436 kb on - strand, within Dshi_0870 at 887.571 kb on + strand, within Dshi_0870 at 887.572 kb on + strand, within Dshi_0870 at 887.614 kb on + strand, within Dshi_0870 at 887.662 kb on + strand, within Dshi_0870 at 887.662 kb on + strand, within Dshi_0870 at 887.672 kb on + strand, within Dshi_0870 at 887.680 kb on - strand, within Dshi_0870 at 887.707 kb on + strand, within Dshi_0870 at 887.707 kb on + strand, within Dshi_0870 at 887.707 kb on + strand, within Dshi_0870 at 887.707 kb on + strand, within Dshi_0870 at 887.707 kb on + strand, within Dshi_0870 at 887.710 kb on - strand, within Dshi_0870 at 887.715 kb on - strand, within Dshi_0870 at 887.720 kb on - strand, within Dshi_0870 at 887.729 kb on + strand, within Dshi_0870 at 887.758 kb on - strand at 887.774 kb on + strand at 887.792 kb on - strand at 887.823 kb on - strand at 887.845 kb on + strand at 887.849 kb on + strand at 887.889 kb on + strand at 887.936 kb on - strand at 888.220 kb on - strand, within Dshi_0871 at 888.229 kb on + strand, within Dshi_0871 at 888.319 kb on + strand at 888.319 kb on + strand at 888.319 kb on + strand at 888.319 kb on + strand at 888.319 kb on + strand at 888.319 kb on + strand at 888.327 kb on - strand at 888.327 kb on - strand at 888.327 kb on - strand at 888.334 kb on - strand at 888.456 kb on + strand at 888.504 kb on + strand at 888.531 kb on - strand at 888.537 kb on + strand at 888.550 kb on - strand, within Dshi_0872 at 888.557 kb on + strand, within Dshi_0872 at 888.589 kb on - strand, within Dshi_0872 at 888.616 kb on + strand at 888.650 kb on + strand, within Dshi_0872 at 888.657 kb on + strand, within Dshi_0872 at 888.696 kb on + strand, within Dshi_0872 at 888.854 kb on - strand, within Dshi_0872 at 888.861 kb on + strand, within Dshi_0872 at 888.866 kb on + strand, within Dshi_0872 at 888.874 kb on - strand, within Dshi_0872
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. L-Lysine 200 mM remove 884,960 + -1.6 885,129 - Dshi_0869 0.12 +0.8 885,130 - Dshi_0869 0.12 -0.3 885,141 + Dshi_0869 0.14 +0.6 885,226 + Dshi_0869 0.23 +0.9 885,238 + Dshi_0869 0.25 +2.9 885,306 + Dshi_0869 0.32 -0.5 885,564 - Dshi_0869 0.61 +0.7 885,569 - Dshi_0869 0.62 -0.7 885,611 + Dshi_0869 0.66 +2.9 885,753 - Dshi_0869 0.82 -2.1 885,774 - Dshi_0869 0.85 -1.8 885,774 - Dshi_0869 0.85 -0.0 885,913 - +0.2 885,953 - -0.5 886,001 + -1.5 886,009 - -0.3 886,058 - +0.6 886,077 - -0.5 886,081 + +0.5 886,087 - -0.9 886,249 - Dshi_0870 0.16 -0.6 886,264 + Dshi_0870 0.17 +2.9 886,273 + Dshi_0870 0.17 -1.7 886,505 - Dshi_0870 0.29 -0.3 886,531 - Dshi_0870 0.30 -0.2 886,531 - Dshi_0870 0.30 -1.3 886,532 - Dshi_0870 0.30 -1.7 886,550 + Dshi_0870 0.31 +0.7 886,563 - Dshi_0870 0.31 -1.1 886,622 - Dshi_0870 0.34 -0.3 886,632 - Dshi_0870 0.35 -0.8 886,634 + Dshi_0870 0.35 +2.0 886,767 - Dshi_0870 0.41 -0.4 886,790 + Dshi_0870 0.43 -0.4 886,800 + Dshi_0870 0.43 +0.3 886,808 - Dshi_0870 0.43 +0.1 886,808 - Dshi_0870 0.43 -0.1 886,810 + Dshi_0870 0.44 +1.2 886,870 - Dshi_0870 0.47 +1.7 886,871 - Dshi_0870 0.47 -1.2 886,888 - Dshi_0870 0.47 +0.1 886,888 - Dshi_0870 0.47 -1.8 886,888 - +1.3 886,899 + Dshi_0870 0.48 +0.9 886,942 - Dshi_0870 0.50 +0.8 886,943 - Dshi_0870 0.50 +0.6 886,963 - Dshi_0870 0.51 -2.3 887,055 - Dshi_0870 0.56 -0.2 887,057 + Dshi_0870 0.56 -1.3 887,057 + Dshi_0870 0.56 -0.4 887,088 + Dshi_0870 0.57 -0.6 887,088 + Dshi_0870 0.57 -0.2 887,091 - Dshi_0870 0.57 +0.1 887,096 - Dshi_0870 0.58 +2.3 887,096 - Dshi_0870 0.58 +0.2 887,117 + Dshi_0870 0.59 +0.3 887,152 - Dshi_0870 0.60 +1.5 887,156 + Dshi_0870 0.61 -0.5 887,202 + Dshi_0870 0.63 -0.3 887,276 + Dshi_0870 0.66 +2.9 887,320 - Dshi_0870 0.69 -0.1 887,362 + Dshi_0870 0.71 +0.5 887,436 - Dshi_0870 0.74 -1.7 887,571 + Dshi_0870 0.81 +0.3 887,572 + Dshi_0870 0.81 -0.7 887,614 + Dshi_0870 0.83 -0.7 887,662 + Dshi_0870 0.85 -1.3 887,662 + Dshi_0870 0.85 +1.9 887,672 + Dshi_0870 0.86 -1.1 887,680 - Dshi_0870 0.86 -1.5 887,707 + Dshi_0870 0.88 +2.7 887,707 + Dshi_0870 0.88 -0.3 887,707 + Dshi_0870 0.88 -0.4 887,707 + Dshi_0870 0.88 +0.2 887,707 + Dshi_0870 0.88 +1.9 887,710 - Dshi_0870 0.88 -1.1 887,715 - Dshi_0870 0.88 -1.4 887,720 - Dshi_0870 0.88 +3.9 887,729 + Dshi_0870 0.89 -2.2 887,758 - +1.9 887,774 + +0.4 887,792 - -2.1 887,823 - +2.9 887,845 + -0.5 887,849 + +0.3 887,889 + +0.1 887,936 - -0.2 888,220 - Dshi_0871 0.70 -1.0 888,229 + Dshi_0871 0.73 -0.8 888,319 + +0.9 888,319 + +0.3 888,319 + -2.0 888,319 + -0.2 888,319 + -1.5 888,319 + -1.3 888,327 - -0.7 888,327 - -0.4 888,327 - -0.4 888,334 - -0.8 888,456 + -0.6 888,504 + -0.2 888,531 - -0.7 888,537 + -0.3 888,550 - Dshi_0872 0.10 +0.6 888,557 + Dshi_0872 0.11 -0.1 888,589 - Dshi_0872 0.13 +0.3 888,616 + -1.0 888,650 + Dshi_0872 0.17 -0.0 888,657 + Dshi_0872 0.17 +0.0 888,696 + Dshi_0872 0.20 -1.1 888,854 - Dshi_0872 0.29 +0.1 888,861 + Dshi_0872 0.30 -0.9 888,866 + Dshi_0872 0.30 +0.1 888,874 - Dshi_0872 0.31 -0.1
Or see this region's nucleotide sequence