Experiment: m.b. L-Lysine 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0676 and Dshi_0677 are separated by 12 nucleotides Dshi_0677 and Dshi_0678 are separated by 113 nucleotides
Dshi_0676: Dshi_0676 - beta-lactamase (RefSeq), at 681,643 to 683,742
_0676
Dshi_0677: Dshi_0677 - hypothetical protein (RefSeq), at 683,755 to 684,570
_0677
Dshi_0678: Dshi_0678 - glycosyl transferase family 14 (RefSeq), at 684,684 to 686,261
_0678
Position (kb) 683
684
685 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 682.773 kb on - strand, within Dshi_0676 at 683.001 kb on + strand, within Dshi_0676 at 683.102 kb on + strand, within Dshi_0676 at 683.136 kb on - strand, within Dshi_0676 at 683.219 kb on + strand, within Dshi_0676 at 683.227 kb on - strand, within Dshi_0676 at 683.237 kb on - strand, within Dshi_0676 at 683.371 kb on + strand, within Dshi_0676 at 683.438 kb on + strand, within Dshi_0676 at 683.473 kb on + strand, within Dshi_0676 at 683.554 kb on - strand at 683.600 kb on + strand at 683.753 kb on + strand at 683.753 kb on + strand at 683.758 kb on + strand at 683.761 kb on - strand at 683.801 kb on - strand at 684.015 kb on - strand, within Dshi_0677 at 684.088 kb on + strand, within Dshi_0677 at 684.217 kb on - strand, within Dshi_0677 at 684.232 kb on - strand, within Dshi_0677 at 684.236 kb on - strand, within Dshi_0677 at 684.245 kb on + strand, within Dshi_0677 at 684.252 kb on + strand, within Dshi_0677 at 684.272 kb on + strand, within Dshi_0677 at 684.295 kb on - strand, within Dshi_0677 at 684.315 kb on + strand, within Dshi_0677 at 684.322 kb on + strand, within Dshi_0677 at 684.323 kb on - strand, within Dshi_0677 at 684.330 kb on - strand, within Dshi_0677 at 684.402 kb on - strand, within Dshi_0677 at 684.470 kb on + strand, within Dshi_0677 at 684.484 kb on - strand, within Dshi_0677 at 684.506 kb on + strand at 684.529 kb on - strand at 684.575 kb on + strand at 684.583 kb on - strand at 684.710 kb on - strand at 684.763 kb on - strand at 684.799 kb on + strand at 684.849 kb on + strand, within Dshi_0678 at 684.855 kb on + strand, within Dshi_0678 at 684.992 kb on + strand, within Dshi_0678 at 685.029 kb on - strand, within Dshi_0678 at 685.045 kb on + strand, within Dshi_0678 at 685.086 kb on - strand, within Dshi_0678 at 685.113 kb on - strand, within Dshi_0678 at 685.245 kb on - strand, within Dshi_0678 at 685.245 kb on - strand, within Dshi_0678 at 685.268 kb on - strand, within Dshi_0678 at 685.296 kb on + strand, within Dshi_0678 at 685.299 kb on - strand, within Dshi_0678 at 685.359 kb on - strand, within Dshi_0678 at 685.412 kb on - strand, within Dshi_0678
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. L-Lysine 200 mM remove 682,773 - Dshi_0676 0.54 -0.5 683,001 + Dshi_0676 0.65 -0.5 683,102 + Dshi_0676 0.69 -0.5 683,136 - Dshi_0676 0.71 -1.8 683,219 + Dshi_0676 0.75 -1.6 683,227 - Dshi_0676 0.75 -2.1 683,237 - Dshi_0676 0.76 +0.4 683,371 + Dshi_0676 0.82 -0.9 683,438 + Dshi_0676 0.85 +0.8 683,473 + Dshi_0676 0.87 +0.5 683,554 - -0.5 683,600 + -0.5 683,753 + -1.6 683,753 + +1.0 683,758 + -2.3 683,761 - -0.5 683,801 - +1.2 684,015 - Dshi_0677 0.32 -0.3 684,088 + Dshi_0677 0.41 -1.0 684,217 - Dshi_0677 0.57 +0.8 684,232 - Dshi_0677 0.58 +0.1 684,236 - Dshi_0677 0.59 +0.3 684,245 + Dshi_0677 0.60 +0.3 684,252 + Dshi_0677 0.61 +0.1 684,272 + Dshi_0677 0.63 -0.8 684,295 - Dshi_0677 0.66 +0.7 684,315 + Dshi_0677 0.69 +1.5 684,322 + Dshi_0677 0.69 +0.4 684,323 - Dshi_0677 0.70 +0.6 684,330 - Dshi_0677 0.70 +0.0 684,402 - Dshi_0677 0.79 +0.4 684,470 + Dshi_0677 0.88 -0.6 684,484 - Dshi_0677 0.89 +0.7 684,506 + +0.6 684,529 - -1.7 684,575 + +3.3 684,583 - +0.5 684,710 - +0.2 684,763 - -0.1 684,799 + -0.2 684,849 + Dshi_0678 0.10 -0.4 684,855 + Dshi_0678 0.11 +2.2 684,992 + Dshi_0678 0.20 -0.0 685,029 - Dshi_0678 0.22 -0.2 685,045 + Dshi_0678 0.23 -2.1 685,086 - Dshi_0678 0.25 +1.1 685,113 - Dshi_0678 0.27 +0.9 685,245 - Dshi_0678 0.36 +2.8 685,245 - Dshi_0678 0.36 -0.2 685,268 - Dshi_0678 0.37 +0.0 685,296 + Dshi_0678 0.39 +1.8 685,299 - Dshi_0678 0.39 +0.1 685,359 - Dshi_0678 0.43 -1.0 685,412 - Dshi_0678 0.46 -0.8
Or see this region's nucleotide sequence