Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0522

Experiment: m.b. L-Lysine 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0521 and Dshi_0522 are separated by 57 nucleotidesDshi_0522 and Dshi_0523 overlap by 4 nucleotidesDshi_0523 and Dshi_0524 overlap by 4 nucleotides Dshi_0521: Dshi_0521 - eIF-2B alpha/beta/delta-related uncharacterized protein (RefSeq), at 506,086 to 507,189 _0521 Dshi_0522: Dshi_0522 - transcriptional regulator, DeoR family (RefSeq), at 507,247 to 508,206 _0522 Dshi_0523: Dshi_0523 - L-fuculose-phosphate aldolase (RefSeq), at 508,203 to 508,898 _0523 Dshi_0524: Dshi_0524 - aldo/keto reductase (RefSeq), at 508,895 to 509,974 _0524 Position (kb) 507 508 509Strain fitness (log2 ratio) -2 -1 0 1at 506.261 kb on + strand, within Dshi_0521at 506.264 kb on - strand, within Dshi_0521at 506.287 kb on - strand, within Dshi_0521at 506.287 kb on - strand, within Dshi_0521at 506.289 kb on + strand, within Dshi_0521at 506.289 kb on + strand, within Dshi_0521at 506.401 kb on + strand, within Dshi_0521at 506.404 kb on - strand, within Dshi_0521at 506.415 kb on + strand, within Dshi_0521at 506.415 kb on + strand, within Dshi_0521at 506.415 kb on + strand, within Dshi_0521at 506.420 kb on + strand, within Dshi_0521at 506.449 kb on - strand, within Dshi_0521at 506.507 kb on + strand, within Dshi_0521at 506.515 kb on - strand, within Dshi_0521at 506.515 kb on - strand, within Dshi_0521at 506.515 kb on - strand, within Dshi_0521at 506.515 kb on - strand, within Dshi_0521at 506.520 kb on - strand, within Dshi_0521at 506.520 kb on - strand, within Dshi_0521at 506.621 kb on + strand, within Dshi_0521at 506.624 kb on - strand, within Dshi_0521at 506.661 kb on + strand, within Dshi_0521at 506.661 kb on + strand, within Dshi_0521at 506.669 kb on - strand, within Dshi_0521at 506.671 kb on + strand, within Dshi_0521at 506.688 kb on + strand, within Dshi_0521at 506.690 kb on + strand, within Dshi_0521at 506.708 kb on + strand, within Dshi_0521at 506.716 kb on - strand, within Dshi_0521at 506.762 kb on - strand, within Dshi_0521at 506.791 kb on - strand, within Dshi_0521at 506.802 kb on + strand, within Dshi_0521at 506.847 kb on + strand, within Dshi_0521at 506.855 kb on - strand, within Dshi_0521at 506.880 kb on + strand, within Dshi_0521at 506.880 kb on + strand, within Dshi_0521at 506.888 kb on - strand, within Dshi_0521at 506.935 kb on + strand, within Dshi_0521at 506.935 kb on + strand, within Dshi_0521at 507.036 kb on + strand, within Dshi_0521at 507.036 kb on + strand, within Dshi_0521at 507.067 kb on - strand, within Dshi_0521at 507.096 kb on + strandat 507.144 kb on + strandat 507.179 kb on - strandat 507.310 kb on - strandat 507.310 kb on - strandat 507.319 kb on - strandat 507.361 kb on + strand, within Dshi_0522at 507.369 kb on - strand, within Dshi_0522at 507.371 kb on + strand, within Dshi_0522at 507.384 kb on - strand, within Dshi_0522at 507.398 kb on + strand, within Dshi_0522at 507.398 kb on + strand, within Dshi_0522at 507.401 kb on - strand, within Dshi_0522at 507.453 kb on + strand, within Dshi_0522at 507.454 kb on - strand, within Dshi_0522at 507.543 kb on + strand, within Dshi_0522at 507.789 kb on + strand, within Dshi_0522at 507.806 kb on + strand, within Dshi_0522at 507.819 kb on - strand, within Dshi_0522at 507.843 kb on + strand, within Dshi_0522at 507.879 kb on + strand, within Dshi_0522at 507.896 kb on - strand, within Dshi_0522at 507.931 kb on + strand, within Dshi_0522at 508.006 kb on - strand, within Dshi_0522at 508.049 kb on - strand, within Dshi_0522at 508.052 kb on + strand, within Dshi_0522at 508.094 kb on + strand, within Dshi_0522at 508.094 kb on + strand, within Dshi_0522at 508.170 kb on - strandat 508.218 kb on - strandat 508.218 kb on - strandat 508.258 kb on + strandat 508.273 kb on - strand, within Dshi_0523at 508.292 kb on - strand, within Dshi_0523at 508.338 kb on - strand, within Dshi_0523at 508.343 kb on - strand, within Dshi_0523at 508.356 kb on - strand, within Dshi_0523at 508.361 kb on - strand, within Dshi_0523at 508.426 kb on - strand, within Dshi_0523at 508.433 kb on + strand, within Dshi_0523at 508.446 kb on - strand, within Dshi_0523at 508.484 kb on - strand, within Dshi_0523at 508.514 kb on - strand, within Dshi_0523at 508.541 kb on - strand, within Dshi_0523at 508.556 kb on - strand, within Dshi_0523at 508.562 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.745 kb on + strand, within Dshi_0523at 508.761 kb on - strand, within Dshi_0523at 508.770 kb on - strand, within Dshi_0523at 508.788 kb on - strand, within Dshi_0523at 508.788 kb on - strand, within Dshi_0523at 508.789 kb on - strand, within Dshi_0523at 508.802 kb on - strand, within Dshi_0523at 508.857 kb on + strandat 508.877 kb on - strandat 508.951 kb on + strandat 508.999 kb on + strandat 509.000 kb on + strandat 509.003 kb on - strand, within Dshi_0524at 509.003 kb on - strand, within Dshi_0524at 509.007 kb on - strand, within Dshi_0524at 509.029 kb on + strand, within Dshi_0524at 509.029 kb on - strand, within Dshi_0524at 509.029 kb on - strand, within Dshi_0524at 509.074 kb on + strand, within Dshi_0524at 509.082 kb on - strand, within Dshi_0524at 509.138 kb on + strand, within Dshi_0524at 509.145 kb on + strand, within Dshi_0524at 509.153 kb on - strand, within Dshi_0524at 509.153 kb on - strand, within Dshi_0524at 509.153 kb on - strand, within Dshi_0524at 509.170 kb on - strand, within Dshi_0524at 509.182 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. L-Lysine 200 mM
remove
506,261 + Dshi_0521 0.16 -0.6
506,264 - Dshi_0521 0.16 +0.5
506,287 - Dshi_0521 0.18 -0.8
506,287 - Dshi_0521 0.18 +0.6
506,289 + Dshi_0521 0.18 -0.2
506,289 + Dshi_0521 0.18 +0.8
506,401 + Dshi_0521 0.29 -1.1
506,404 - Dshi_0521 0.29 -1.4
506,415 + Dshi_0521 0.30 -0.1
506,415 + Dshi_0521 0.30 +0.1
506,415 + Dshi_0521 0.30 -1.0
506,420 + Dshi_0521 0.30 -0.9
506,449 - Dshi_0521 0.33 -0.4
506,507 + Dshi_0521 0.38 -0.1
506,515 - Dshi_0521 0.39 -0.4
506,515 - Dshi_0521 0.39 -0.8
506,515 - Dshi_0521 0.39 +0.4
506,515 - Dshi_0521 0.39 -0.0
506,520 - Dshi_0521 0.39 -0.8
506,520 - Dshi_0521 0.39 +0.1
506,621 + Dshi_0521 0.48 -0.0
506,624 - Dshi_0521 0.49 -0.8
506,661 + Dshi_0521 0.52 +0.4
506,661 + Dshi_0521 0.52 -0.2
506,669 - Dshi_0521 0.53 -0.3
506,671 + Dshi_0521 0.53 -0.5
506,688 + Dshi_0521 0.55 +0.1
506,690 + Dshi_0521 0.55 -0.0
506,708 + Dshi_0521 0.56 -0.2
506,716 - Dshi_0521 0.57 +0.2
506,762 - Dshi_0521 0.61 -0.2
506,791 - Dshi_0521 0.64 +0.8
506,802 + Dshi_0521 0.65 -1.9
506,847 + Dshi_0521 0.69 -0.1
506,855 - Dshi_0521 0.70 -0.5
506,880 + Dshi_0521 0.72 -2.2
506,880 + Dshi_0521 0.72 -0.6
506,888 - Dshi_0521 0.73 -1.0
506,935 + Dshi_0521 0.77 +0.1
506,935 + Dshi_0521 0.77 +0.1
507,036 + Dshi_0521 0.86 -0.7
507,036 + Dshi_0521 0.86 +0.4
507,067 - Dshi_0521 0.89 -1.3
507,096 + -1.2
507,144 + -1.3
507,179 - -0.6
507,310 - -1.1
507,310 - -1.4
507,319 - -1.5
507,361 + Dshi_0522 0.12 -1.0
507,369 - Dshi_0522 0.13 -0.2
507,371 + Dshi_0522 0.13 -1.0
507,384 - Dshi_0522 0.14 +0.1
507,398 + Dshi_0522 0.16 +0.8
507,398 + Dshi_0522 0.16 +0.7
507,401 - Dshi_0522 0.16 +0.5
507,453 + Dshi_0522 0.21 -0.0
507,454 - Dshi_0522 0.22 -0.1
507,543 + Dshi_0522 0.31 -0.8
507,789 + Dshi_0522 0.56 +0.4
507,806 + Dshi_0522 0.58 +0.8
507,819 - Dshi_0522 0.60 +0.1
507,843 + Dshi_0522 0.62 +0.4
507,879 + Dshi_0522 0.66 +0.6
507,896 - Dshi_0522 0.68 +0.6
507,931 + Dshi_0522 0.71 -0.1
508,006 - Dshi_0522 0.79 +0.8
508,049 - Dshi_0522 0.84 -0.6
508,052 + Dshi_0522 0.84 +0.2
508,094 + Dshi_0522 0.88 -1.4
508,094 + Dshi_0522 0.88 -0.3
508,170 - -1.2
508,218 - +0.1
508,218 - -0.1
508,258 + +0.0
508,273 - Dshi_0523 0.10 +0.1
508,292 - Dshi_0523 0.13 -0.4
508,338 - Dshi_0523 0.19 -2.7
508,343 - Dshi_0523 0.20 -1.6
508,356 - Dshi_0523 0.22 -2.6
508,361 - Dshi_0523 0.23 -0.9
508,426 - Dshi_0523 0.32 -0.2
508,433 + Dshi_0523 0.33 +0.2
508,446 - Dshi_0523 0.35 -0.8
508,484 - Dshi_0523 0.40 -1.2
508,514 - Dshi_0523 0.45 -0.5
508,541 - Dshi_0523 0.49 +0.1
508,556 - Dshi_0523 0.51 -0.4
508,562 + Dshi_0523 0.52 +0.1
508,624 + Dshi_0523 0.60 +0.2
508,624 + Dshi_0523 0.60 -1.6
508,624 + Dshi_0523 0.60 +0.1
508,624 + Dshi_0523 0.60 +0.3
508,624 + Dshi_0523 0.60 -0.9
508,624 + Dshi_0523 0.60 +0.0
508,624 + Dshi_0523 0.60 +0.9
508,624 + Dshi_0523 0.60 -1.1
508,624 + Dshi_0523 0.60 +0.1
508,632 - Dshi_0523 0.62 -0.2
508,632 - Dshi_0523 0.62 -0.4
508,632 - Dshi_0523 0.62 -0.1
508,632 - Dshi_0523 0.62 -0.3
508,632 - Dshi_0523 0.62 -1.0
508,632 - Dshi_0523 0.62 -0.3
508,632 - Dshi_0523 0.62 +0.0
508,632 - Dshi_0523 0.62 -0.7
508,632 - Dshi_0523 0.62 -0.7
508,632 - Dshi_0523 0.62 -2.0
508,632 - Dshi_0523 0.62 +0.3
508,632 - Dshi_0523 0.62 +0.6
508,632 - Dshi_0523 0.62 -0.9
508,632 - Dshi_0523 0.62 +0.3
508,632 - Dshi_0523 0.62 +0.1
508,632 - Dshi_0523 0.62 -0.7
508,632 - Dshi_0523 0.62 +0.2
508,745 + Dshi_0523 0.78 -0.2
508,761 - Dshi_0523 0.80 -0.3
508,770 - Dshi_0523 0.81 -0.0
508,788 - Dshi_0523 0.84 +0.7
508,788 - Dshi_0523 0.84 -0.1
508,789 - Dshi_0523 0.84 +0.3
508,802 - Dshi_0523 0.86 -1.0
508,857 + -0.8
508,877 - +0.4
508,951 + +0.2
508,999 + +1.0
509,000 + -0.3
509,003 - Dshi_0524 0.10 -0.7
509,003 - Dshi_0524 0.10 -0.5
509,007 - Dshi_0524 0.10 -0.9
509,029 + Dshi_0524 0.12 -1.5
509,029 - Dshi_0524 0.12 -0.8
509,029 - Dshi_0524 0.12 +0.2
509,074 + Dshi_0524 0.17 +0.7
509,082 - Dshi_0524 0.17 -0.2
509,138 + Dshi_0524 0.23 -0.2
509,145 + Dshi_0524 0.23 -0.1
509,153 - Dshi_0524 0.24 -0.3
509,153 - Dshi_0524 0.24 -0.2
509,153 - Dshi_0524 0.24 -0.4
509,170 - Dshi_0524 0.25 +0.2
509,182 - +0.6

Or see this region's nucleotide sequence