Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0063

Experiment: m.b. L-Lysine 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0062 and Dshi_0063 are separated by 122 nucleotidesDshi_0063 and Dshi_0064 overlap by 14 nucleotides Dshi_0062: Dshi_0062 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family (RefSeq), at 62,385 to 63,650 _0062 Dshi_0063: Dshi_0063 - Inositol-phosphate phosphatase (RefSeq), at 63,773 to 64,567 _0063 Dshi_0064: Dshi_0064 - peptidase U62 modulator of DNA gyrase (RefSeq), at 64,554 to 65,900 _0064 Position (kb) 63 64 65Strain fitness (log2 ratio) -2 -1 0 1 2 3at 63.616 kb on - strandat 63.645 kb on + strandat 63.645 kb on + strandat 63.653 kb on - strandat 63.698 kb on - strandat 63.711 kb on - strandat 63.857 kb on - strand, within Dshi_0063at 63.857 kb on - strand, within Dshi_0063at 63.891 kb on - strand, within Dshi_0063at 64.002 kb on - strand, within Dshi_0063at 64.157 kb on + strand, within Dshi_0063at 64.188 kb on + strand, within Dshi_0063at 64.259 kb on + strand, within Dshi_0063at 64.264 kb on + strand, within Dshi_0063at 64.479 kb on + strand, within Dshi_0063at 64.569 kb on + strandat 64.606 kb on - strandat 64.613 kb on - strandat 64.641 kb on + strandat 64.855 kb on - strand, within Dshi_0064at 64.905 kb on - strand, within Dshi_0064at 65.082 kb on - strand, within Dshi_0064at 65.240 kb on + strand, within Dshi_0064at 65.319 kb on + strand, within Dshi_0064at 65.486 kb on - strand, within Dshi_0064

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. L-Lysine 200 mM
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63,616 - +2.3
63,645 + +0.0
63,645 + +0.5
63,653 - -1.9
63,698 - -0.4
63,711 - +0.1
63,857 - Dshi_0063 0.11 +1.2
63,857 - Dshi_0063 0.11 -0.4
63,891 - Dshi_0063 0.15 +1.8
64,002 - Dshi_0063 0.29 +0.1
64,157 + Dshi_0063 0.48 +2.5
64,188 + Dshi_0063 0.52 +0.5
64,259 + Dshi_0063 0.61 +0.4
64,264 + Dshi_0063 0.62 -0.7
64,479 + Dshi_0063 0.89 -1.7
64,569 + +0.7
64,606 - -0.1
64,613 - +1.5
64,641 + -0.7
64,855 - Dshi_0064 0.22 -0.7
64,905 - Dshi_0064 0.26 +0.0
65,082 - Dshi_0064 0.39 -0.5
65,240 + Dshi_0064 0.51 +0.3
65,319 + Dshi_0064 0.57 +3.0
65,486 - Dshi_0064 0.69 -0.5

Or see this region's nucleotide sequence