Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4162 and Dshi_4163 overlap by 4 nucleotides Dshi_4163 and Dshi_4164 overlap by 4 nucleotides Dshi_4164 and Dshi_4165 overlap by 11 nucleotides
Dshi_4162: Dshi_4162 - glycosyl transferase group 1 (RefSeq), at 9,725 to 10,768
_4162
Dshi_4163: Dshi_4163 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 10,765 to 12,342
_4163
Dshi_4164: Dshi_4164 - ABC transporter related (RefSeq), at 12,339 to 13,145
_4164
Dshi_4165: Dshi_4165 - NMT1/THI5 like domain protein (RefSeq), at 13,135 to 14,130
_4165
Position (kb) 10
11
12
13 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 10.045 kb on - strand, within Dshi_4162 at 10.362 kb on + strand, within Dshi_4162 at 10.371 kb on - strand, within Dshi_4162 at 10.845 kb on + strand at 11.084 kb on - strand, within Dshi_4163 at 11.108 kb on - strand at 11.169 kb on + strand, within Dshi_4163 at 11.177 kb on - strand, within Dshi_4163 at 11.383 kb on + strand, within Dshi_4163 at 11.663 kb on - strand, within Dshi_4163 at 11.731 kb on - strand, within Dshi_4163 at 11.771 kb on - strand, within Dshi_4163 at 11.883 kb on - strand, within Dshi_4163 at 11.898 kb on - strand, within Dshi_4163 at 12.399 kb on - strand at 12.488 kb on + strand, within Dshi_4164 at 12.536 kb on - strand, within Dshi_4164 at 12.845 kb on + strand, within Dshi_4164 at 12.955 kb on - strand, within Dshi_4164 at 13.142 kb on + strand at 13.142 kb on + strand at 13.150 kb on - strand at 13.272 kb on + strand, within Dshi_4165 at 13.272 kb on + strand, within Dshi_4165
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 10,045 - Dshi_4162 0.31 -1.3 10,362 + Dshi_4162 0.61 -1.3 10,371 - Dshi_4162 0.62 -1.5 10,845 + +0.1 11,084 - Dshi_4163 0.20 -0.2 11,108 - +1.7 11,169 + Dshi_4163 0.26 -1.5 11,177 - Dshi_4163 0.26 -2.9 11,383 + Dshi_4163 0.39 -0.5 11,663 - Dshi_4163 0.57 -0.9 11,731 - Dshi_4163 0.61 -0.8 11,771 - Dshi_4163 0.64 -0.8 11,883 - Dshi_4163 0.71 -0.9 11,898 - Dshi_4163 0.72 -2.1 12,399 - -1.9 12,488 + Dshi_4164 0.18 +0.1 12,536 - Dshi_4164 0.24 +1.0 12,845 + Dshi_4164 0.63 +1.1 12,955 - Dshi_4164 0.76 -2.4 13,142 + +2.1 13,142 + -1.2 13,150 - +0.9 13,272 + Dshi_4165 0.14 +0.2 13,272 + Dshi_4165 0.14 -1.2
Or see this region's nucleotide sequence