Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2925 and Dshi_2926 are separated by 120 nucleotides Dshi_2926 and Dshi_2927 are separated by 49 nucleotides
Dshi_2925: Dshi_2925 - HAD-superfamily subfamily IIA hydrolase like protein (RefSeq), at 3,084,036 to 3,084,908
_2925
Dshi_2926: Dshi_2926 - MaoC domain protein dehydratase (RefSeq), at 3,085,029 to 3,085,472
_2926
Dshi_2927: Dshi_2927 - riboflavin biosynthesis protein RibF (RefSeq), at 3,085,522 to 3,086,475
_2927
Dshi_2928: Dshi_2928 - protein of unknown function UPF0153 (RefSeq), at 3,086,472 to 3,086,963
_2928
Position (kb)
3085
3086 Strain fitness (log2 ratio)
-1
0
1
2 at 3084.040 kb on - strand at 3084.106 kb on - strand at 3084.148 kb on - strand, within Dshi_2925 at 3084.155 kb on + strand, within Dshi_2925 at 3084.202 kb on + strand, within Dshi_2925 at 3084.497 kb on + strand, within Dshi_2925 at 3084.505 kb on - strand, within Dshi_2925 at 3084.517 kb on + strand, within Dshi_2925 at 3084.567 kb on + strand, within Dshi_2925 at 3084.578 kb on + strand, within Dshi_2925 at 3084.578 kb on + strand, within Dshi_2925 at 3084.599 kb on + strand, within Dshi_2925 at 3084.694 kb on - strand, within Dshi_2925 at 3084.710 kb on - strand, within Dshi_2925 at 3084.765 kb on - strand, within Dshi_2925 at 3085.147 kb on - strand, within Dshi_2926 at 3085.269 kb on + strand, within Dshi_2926 at 3085.440 kb on - strand at 3085.445 kb on - strand at 3085.481 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 3,084,040 - +0.6 3,084,106 - -0.6 3,084,148 - Dshi_2925 0.13 +0.6 3,084,155 + Dshi_2925 0.14 +0.3 3,084,202 + Dshi_2925 0.19 -0.0 3,084,497 + Dshi_2925 0.53 +0.6 3,084,505 - Dshi_2925 0.54 -0.8 3,084,517 + Dshi_2925 0.55 -0.2 3,084,567 + Dshi_2925 0.61 +0.0 3,084,578 + Dshi_2925 0.62 +0.2 3,084,578 + Dshi_2925 0.62 +2.1 3,084,599 + Dshi_2925 0.64 -0.6 3,084,694 - Dshi_2925 0.75 +1.5 3,084,710 - Dshi_2925 0.77 +0.2 3,084,765 - Dshi_2925 0.84 +1.6 3,085,147 - Dshi_2926 0.27 +1.1 3,085,269 + Dshi_2926 0.54 +0.2 3,085,440 - +0.2 3,085,445 - +1.9 3,085,481 - +1.5
Or see this region's nucleotide sequence