Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2829 and Dshi_2830 are separated by 76 nucleotides Dshi_2830 and Dshi_2831 are separated by 24 nucleotides Dshi_2831 and Dshi_2832 are separated by 110 nucleotides
Dshi_2829: Dshi_2829 - glutathione synthetase (RefSeq), at 2,985,279 to 2,986,226
_2829
Dshi_2830: Dshi_2830 - protein of unknown function UPF0102 (RefSeq), at 2,986,303 to 2,986,707
_2830
Dshi_2831: Dshi_2831 - Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase (RefSeq), at 2,986,732 to 2,987,586
_2831
Dshi_2832: Dshi_2832 - extracellular ligand-binding receptor (RefSeq), at 2,987,697 to 2,988,881
_2832
Position (kb)
2986
2987 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2985.315 kb on + strand at 2986.144 kb on - strand at 2986.208 kb on - strand at 2986.380 kb on - strand, within Dshi_2830 at 2986.478 kb on + strand, within Dshi_2830 at 2986.653 kb on + strand, within Dshi_2830 at 2986.680 kb on + strand at 2986.730 kb on - strand at 2986.739 kb on - strand at 2986.781 kb on - strand at 2986.818 kb on + strand, within Dshi_2831 at 2986.826 kb on - strand, within Dshi_2831 at 2986.858 kb on + strand, within Dshi_2831 at 2986.977 kb on - strand, within Dshi_2831 at 2987.211 kb on - strand, within Dshi_2831 at 2987.211 kb on - strand, within Dshi_2831 at 2987.257 kb on + strand, within Dshi_2831 at 2987.364 kb on - strand, within Dshi_2831 at 2987.406 kb on + strand, within Dshi_2831 at 2987.502 kb on - strand at 2987.525 kb on - strand at 2987.575 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 2,985,315 + -1.2 2,986,144 - +0.7 2,986,208 - -1.7 2,986,380 - Dshi_2830 0.19 -1.9 2,986,478 + Dshi_2830 0.43 -0.7 2,986,653 + Dshi_2830 0.86 -0.6 2,986,680 + -0.4 2,986,730 - -0.2 2,986,739 - -0.0 2,986,781 - -1.0 2,986,818 + Dshi_2831 0.10 +2.4 2,986,826 - Dshi_2831 0.11 -0.4 2,986,858 + Dshi_2831 0.15 -2.9 2,986,977 - Dshi_2831 0.29 +2.1 2,987,211 - Dshi_2831 0.56 -2.1 2,987,211 - Dshi_2831 0.56 +0.8 2,987,257 + Dshi_2831 0.61 -0.0 2,987,364 - Dshi_2831 0.74 -2.5 2,987,406 + Dshi_2831 0.79 -0.1 2,987,502 - +1.0 2,987,525 - +2.4 2,987,575 + -2.0
Or see this region's nucleotide sequence