Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2826

Experiment: m.b. Cholin acetate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2825 and Dshi_2826 are separated by 46 nucleotidesDshi_2826 and Dshi_2827 are separated by 37 nucleotidesDshi_2827 and Dshi_2828 are separated by 92 nucleotides Dshi_2825: Dshi_2825 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding (RefSeq), at 2,981,199 to 2,982,374 _2825 Dshi_2826: Dshi_2826 - hypothetical protein (RefSeq), at 2,982,421 to 2,983,074 _2826 Dshi_2827: Dshi_2827 - YceI family protein (RefSeq), at 2,983,112 to 2,983,675 _2827 Dshi_2828: Dshi_2828 - Mg chelatase, subunit ChlI (RefSeq), at 2,983,768 to 2,985,282 _2828 Position (kb) 2982 2983 2984Strain fitness (log2 ratio) -2 -1 0 1 2at 2981.766 kb on - strand, within Dshi_2825at 2981.770 kb on - strand, within Dshi_2825at 2981.952 kb on + strand, within Dshi_2825at 2982.040 kb on + strand, within Dshi_2825at 2982.040 kb on + strand, within Dshi_2825at 2982.043 kb on - strand, within Dshi_2825at 2982.683 kb on + strand, within Dshi_2826at 2982.737 kb on - strand, within Dshi_2826at 2983.100 kb on - strandat 2983.102 kb on + strandat 2983.110 kb on - strandat 2983.317 kb on + strandat 2983.325 kb on - strand, within Dshi_2827at 2983.382 kb on - strand, within Dshi_2827at 2983.538 kb on + strand, within Dshi_2827at 2983.570 kb on + strand, within Dshi_2827at 2983.601 kb on - strand, within Dshi_2827at 2983.608 kb on + strand, within Dshi_2827at 2983.737 kb on + strandat 2983.756 kb on - strandat 2983.969 kb on - strand, within Dshi_2828at 2983.976 kb on + strand, within Dshi_2828

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM
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2,981,766 - Dshi_2825 0.48 -0.1
2,981,770 - Dshi_2825 0.49 +0.4
2,981,952 + Dshi_2825 0.64 +1.2
2,982,040 + Dshi_2825 0.72 +0.4
2,982,040 + Dshi_2825 0.72 -1.5
2,982,043 - Dshi_2825 0.72 +2.4
2,982,683 + Dshi_2826 0.40 +2.4
2,982,737 - Dshi_2826 0.48 -0.9
2,983,100 - -0.7
2,983,102 + -0.2
2,983,110 - -1.4
2,983,317 + +2.4
2,983,325 - Dshi_2827 0.38 +1.3
2,983,382 - Dshi_2827 0.48 -0.4
2,983,538 + Dshi_2827 0.76 -2.0
2,983,570 + Dshi_2827 0.81 +2.0
2,983,601 - Dshi_2827 0.87 +0.4
2,983,608 + Dshi_2827 0.88 +0.4
2,983,737 + +0.1
2,983,756 - +0.4
2,983,969 - Dshi_2828 0.13 +0.0
2,983,976 + Dshi_2828 0.14 -0.1

Or see this region's nucleotide sequence