Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2734

Experiment: m.b. Cholin acetate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2733 and Dshi_2734 are separated by 164 nucleotidesDshi_2734 and Dshi_2735 overlap by 1 nucleotidesDshi_2735 and Dshi_2736 overlap by 1 nucleotides Dshi_2733: Dshi_2733 - protease Do (RefSeq), at 2,894,377 to 2,895,882 _2733 Dshi_2734: Dshi_2734 - hypothetical protein (RefSeq), at 2,896,047 to 2,896,241 _2734 Dshi_2735: Dshi_2735 - HflC protein (RefSeq), at 2,896,241 to 2,897,134 _2735 Dshi_2736: Dshi_2736 - HflK protein (RefSeq), at 2,897,134 to 2,898,282 _2736 Position (kb) 2896 2897Strain fitness (log2 ratio) -2 -1 0 1 2at 2895.133 kb on - strandat 2895.318 kb on - strand, within Dshi_2733at 2895.330 kb on + strand, within Dshi_2733at 2895.454 kb on - strand, within Dshi_2733at 2895.455 kb on + strand, within Dshi_2733at 2895.546 kb on - strand, within Dshi_2733at 2895.676 kb on - strand, within Dshi_2733at 2895.845 kb on + strandat 2895.882 kb on + strandat 2895.882 kb on + strandat 2895.884 kb on + strandat 2896.018 kb on - strandat 2896.077 kb on + strand, within Dshi_2734at 2896.133 kb on - strand, within Dshi_2734at 2896.426 kb on - strand, within Dshi_2735at 2896.438 kb on + strand, within Dshi_2735at 2896.440 kb on + strand, within Dshi_2735at 2896.533 kb on - strand, within Dshi_2735at 2896.670 kb on + strand, within Dshi_2735at 2896.704 kb on - strand, within Dshi_2735at 2896.759 kb on - strand, within Dshi_2735at 2897.013 kb on + strand, within Dshi_2735at 2897.021 kb on - strand, within Dshi_2735at 2897.021 kb on - strand, within Dshi_2735at 2897.021 kb on - strand, within Dshi_2735at 2897.026 kb on - strand, within Dshi_2735at 2897.116 kb on - strandat 2897.153 kb on - strandat 2897.153 kb on - strandat 2897.166 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM
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2,895,133 - +2.5
2,895,318 - Dshi_2733 0.62 -1.1
2,895,330 + Dshi_2733 0.63 +0.9
2,895,454 - Dshi_2733 0.72 -1.2
2,895,455 + Dshi_2733 0.72 -0.3
2,895,546 - Dshi_2733 0.78 +0.5
2,895,676 - Dshi_2733 0.86 +0.3
2,895,845 + +0.6
2,895,882 + -1.1
2,895,882 + -2.0
2,895,884 + -0.8
2,896,018 - +0.2
2,896,077 + Dshi_2734 0.15 -1.5
2,896,133 - Dshi_2734 0.44 -0.7
2,896,426 - Dshi_2735 0.21 +1.2
2,896,438 + Dshi_2735 0.22 +0.8
2,896,440 + Dshi_2735 0.22 +0.4
2,896,533 - Dshi_2735 0.33 -1.3
2,896,670 + Dshi_2735 0.48 +1.5
2,896,704 - Dshi_2735 0.52 +1.0
2,896,759 - Dshi_2735 0.58 +0.4
2,897,013 + Dshi_2735 0.86 +0.6
2,897,021 - Dshi_2735 0.87 +1.2
2,897,021 - Dshi_2735 0.87 -0.9
2,897,021 - Dshi_2735 0.87 +0.9
2,897,026 - Dshi_2735 0.88 -1.8
2,897,116 - +2.1
2,897,153 - -0.9
2,897,153 - +0.1
2,897,166 - +0.1

Or see this region's nucleotide sequence