Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2188

Experiment: m.b. Cholin acetate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2185 and Dshi_2186 are separated by 263 nucleotidesDshi_2186 and Dshi_2187 are separated by 28 nucleotidesDshi_2187 and Dshi_2188 are separated by 12 nucleotidesDshi_2188 and Dshi_2189 are separated by 191 nucleotides Dshi_2185: Dshi_2185 - YceI family protein (RefSeq), at 2,312,706 to 2,313,290 _2185 Dshi_2186: Dshi_2186 - ribosomal protein S6 (RefSeq), at 2,313,554 to 2,313,907 _2186 Dshi_2187: Dshi_2187 - ribosomal protein S18 (RefSeq), at 2,313,936 to 2,314,163 _2187 Dshi_2188: Dshi_2188 - ribosomal protein L9 (RefSeq), at 2,314,176 to 2,314,805 _2188 Dshi_2189: Dshi_2189 - 5'-Nucleotidase domain protein (RefSeq), at 2,314,997 to 2,316,958 _2189 Position (kb) 2314 2315Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2313.264 kb on - strandat 2313.274 kb on - strandat 2313.292 kb on - strandat 2313.332 kb on - strandat 2314.403 kb on - strand, within Dshi_2188at 2314.843 kb on + strandat 2315.073 kb on - strandat 2315.099 kb on + strandat 2315.186 kb on - strandat 2315.351 kb on + strand, within Dshi_2189at 2315.546 kb on - strand, within Dshi_2189at 2315.576 kb on - strand, within Dshi_2189at 2315.578 kb on + strand, within Dshi_2189at 2315.636 kb on + strand, within Dshi_2189at 2315.712 kb on - strand, within Dshi_2189

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM
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2,313,264 - -0.5
2,313,274 - +0.1
2,313,292 - +0.3
2,313,332 - -2.0
2,314,403 - Dshi_2188 0.36 -1.6
2,314,843 + -2.7
2,315,073 - +1.0
2,315,099 + +2.5
2,315,186 - -0.5
2,315,351 + Dshi_2189 0.18 -1.3
2,315,546 - Dshi_2189 0.28 -3.1
2,315,576 - Dshi_2189 0.30 -0.5
2,315,578 + Dshi_2189 0.30 -1.6
2,315,636 + Dshi_2189 0.33 -0.4
2,315,712 - Dshi_2189 0.36 -1.0

Or see this region's nucleotide sequence