Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2185 and Dshi_2186 are separated by 263 nucleotides Dshi_2186 and Dshi_2187 are separated by 28 nucleotides Dshi_2187 and Dshi_2188 are separated by 12 nucleotides Dshi_2188 and Dshi_2189 are separated by 191 nucleotides
Dshi_2185: Dshi_2185 - YceI family protein (RefSeq), at 2,312,706 to 2,313,290
_2185
Dshi_2186: Dshi_2186 - ribosomal protein S6 (RefSeq), at 2,313,554 to 2,313,907
_2186
Dshi_2187: Dshi_2187 - ribosomal protein S18 (RefSeq), at 2,313,936 to 2,314,163
_2187
Dshi_2188: Dshi_2188 - ribosomal protein L9 (RefSeq), at 2,314,176 to 2,314,805
_2188
Dshi_2189: Dshi_2189 - 5'-Nucleotidase domain protein (RefSeq), at 2,314,997 to 2,316,958
_2189
Position (kb)
2314
2315 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2313.264 kb on - strand at 2313.274 kb on - strand at 2313.292 kb on - strand at 2313.332 kb on - strand at 2314.403 kb on - strand, within Dshi_2188 at 2314.843 kb on + strand at 2315.073 kb on - strand at 2315.099 kb on + strand at 2315.186 kb on - strand at 2315.351 kb on + strand, within Dshi_2189 at 2315.546 kb on - strand, within Dshi_2189 at 2315.576 kb on - strand, within Dshi_2189 at 2315.578 kb on + strand, within Dshi_2189 at 2315.636 kb on + strand, within Dshi_2189 at 2315.712 kb on - strand, within Dshi_2189
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 2,313,264 - -0.5 2,313,274 - +0.1 2,313,292 - +0.3 2,313,332 - -2.0 2,314,403 - Dshi_2188 0.36 -1.6 2,314,843 + -2.7 2,315,073 - +1.0 2,315,099 + +2.5 2,315,186 - -0.5 2,315,351 + Dshi_2189 0.18 -1.3 2,315,546 - Dshi_2189 0.28 -3.1 2,315,576 - Dshi_2189 0.30 -0.5 2,315,578 + Dshi_2189 0.30 -1.6 2,315,636 + Dshi_2189 0.33 -0.4 2,315,712 - Dshi_2189 0.36 -1.0
Or see this region's nucleotide sequence