Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2037

Experiment: m.b. Cholin acetate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2035 and Dshi_2036 overlap by 4 nucleotidesDshi_2036 and Dshi_2037 are separated by 15 nucleotidesDshi_2037 and Dshi_2038 are separated by 12 nucleotides Dshi_2035: Dshi_2035 - short-chain dehydrogenase/reductase SDR (RefSeq), at 2,155,018 to 2,155,782 _2035 Dshi_2036: Dshi_2036 - Alcohol dehydrogenase GroES domain protein (RefSeq), at 2,155,779 to 2,156,762 _2036 Dshi_2037: Dshi_2037 - hypothetical protein (RefSeq), at 2,156,778 to 2,157,068 _2037 Dshi_2038: Dshi_2038 - Altronate dehydratase (RefSeq), at 2,157,081 to 2,158,262 _2038 Position (kb) 2156 2157 2158Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2155.798 kb on - strandat 2155.865 kb on - strandat 2155.938 kb on - strand, within Dshi_2036at 2156.071 kb on + strand, within Dshi_2036at 2156.182 kb on - strand, within Dshi_2036at 2156.425 kb on - strandat 2156.511 kb on - strand, within Dshi_2036at 2156.531 kb on - strand, within Dshi_2036at 2156.556 kb on + strand, within Dshi_2036at 2156.702 kb on + strandat 2156.710 kb on - strandat 2156.718 kb on + strandat 2156.849 kb on + strand, within Dshi_2037at 2156.873 kb on - strand, within Dshi_2037at 2156.893 kb on - strand, within Dshi_2037at 2156.954 kb on + strand, within Dshi_2037at 2156.962 kb on - strand, within Dshi_2037at 2157.031 kb on - strand, within Dshi_2037at 2157.159 kb on - strandat 2157.237 kb on - strand, within Dshi_2038at 2157.307 kb on + strand, within Dshi_2038at 2157.326 kb on - strand, within Dshi_2038at 2157.358 kb on + strand, within Dshi_2038at 2157.664 kb on - strand, within Dshi_2038at 2157.818 kb on + strand, within Dshi_2038at 2157.875 kb on + strand, within Dshi_2038at 2157.887 kb on + strand, within Dshi_2038at 2157.905 kb on + strand, within Dshi_2038at 2157.905 kb on + strand, within Dshi_2038

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM
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2,155,798 - -0.1
2,155,865 - +0.1
2,155,938 - Dshi_2036 0.16 +2.1
2,156,071 + Dshi_2036 0.30 -1.5
2,156,182 - Dshi_2036 0.41 -0.9
2,156,425 - +0.4
2,156,511 - Dshi_2036 0.74 -2.5
2,156,531 - Dshi_2036 0.76 -1.5
2,156,556 + Dshi_2036 0.79 -1.3
2,156,702 + +2.8
2,156,710 - -0.5
2,156,718 + -2.0
2,156,849 + Dshi_2037 0.24 -0.3
2,156,873 - Dshi_2037 0.33 -0.6
2,156,893 - Dshi_2037 0.40 -1.3
2,156,954 + Dshi_2037 0.60 +0.4
2,156,962 - Dshi_2037 0.63 -1.5
2,157,031 - Dshi_2037 0.87 -1.4
2,157,159 - +0.6
2,157,237 - Dshi_2038 0.13 -1.9
2,157,307 + Dshi_2038 0.19 +1.4
2,157,326 - Dshi_2038 0.21 -1.1
2,157,358 + Dshi_2038 0.23 +2.3
2,157,664 - Dshi_2038 0.49 -0.1
2,157,818 + Dshi_2038 0.62 -0.6
2,157,875 + Dshi_2038 0.67 -0.2
2,157,887 + Dshi_2038 0.68 +1.0
2,157,905 + Dshi_2038 0.70 +0.1
2,157,905 + Dshi_2038 0.70 -0.6

Or see this region's nucleotide sequence