Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1865

Experiment: m.b. Cholin acetate 40 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Cholin acetate 40 mM
1,943,171	+		Dshi_1864	0.32	+1.0
1,943,249	+		Dshi_1864	0.39	-0.2
1,943,393	+		Dshi_1864	0.52	-0.2
1,943,547	-		Dshi_1864	0.66	-2.3
1,943,551	+		Dshi_1864	0.66	+0.9
1,943,559	-		Dshi_1864	0.67	-0.7
1,943,593	+		Dshi_1864	0.70	-1.8
1,943,635	+		Dshi_1864	0.74	-1.1
1,943,642	+		Dshi_1864	0.74	+1.0
1,943,714	-		Dshi_1864	0.81	+1.3
1,943,749	+		Dshi_1864	0.84	+2.0
1,943,757	-		Dshi_1864	0.85	+0.8
1,943,780	+		Dshi_1864	0.87	-1.2
1,943,788	-		Dshi_1864	0.88	-0.1
1,943,797	+		Dshi_1864	0.88	+1.0
1,943,853	+				-1.1
1,943,867	+				+1.5
1,943,868	+				-0.5
1,943,868	+				+0.3
1,943,908	+				-1.1
1,943,908	+				+0.0
1,943,908	+				+0.0
1,943,916	-				+0.4
1,943,916	-				+1.4
1,943,916	-				+1.4
1,943,916	-				-0.9
1,943,916	-				-0.6
1,943,916	-				-0.7
1,943,916	-				+0.2
1,943,916	-				+0.8
1,943,916	-				+0.9
1,943,916	-				-0.9
1,943,916	-				+0.8
1,943,920	+				-0.4
1,943,921	-				-0.0
1,943,931	+				-0.6
1,943,931	-				-1.7
1,943,931	-				+2.1
1,943,939	+				-1.3
1,944,015	+				+0.5
1,944,019	+				+0.7
1,944,021	+				+0.0
1,944,024	-				+2.5
1,944,029	+				-0.1
1,944,029	+				-0.5
1,944,029	-				+0.7
1,944,029	-				-0.5
1,944,029	-				+0.8
1,944,037	+				+0.5
1,944,038	+				+1.9
1,944,038	+				-1.0
1,944,042	+				+2.9
1,944,042	+				+0.6
1,944,042	+				-1.3
1,944,047	+				+0.1
1,944,047	+				-0.5
1,944,047	+				+0.1
1,944,047	+				+0.0
1,944,055	-				-2.0
1,944,055	-				-0.4
1,944,055	-				-1.5
1,944,055	-				-0.6
1,944,055	-				+1.7
1,944,055	-				+0.8
1,944,055	-				-3.2
1,944,060	-				-1.8
1,944,130	-				-0.4
1,944,143	+		Dshi_1865	0.11	-0.1
1,944,147	-		Dshi_1865	0.12	-0.6
1,944,150	-		Dshi_1865	0.12	+1.0
1,944,157	-		Dshi_1865	0.13	-0.4
1,944,158	-		Dshi_1865	0.13	+0.0
1,944,165	+		Dshi_1865	0.14	-2.2
1,944,173	-		Dshi_1865	0.15	+0.7
1,944,175	+		Dshi_1865	0.15	-2.5
1,944,190	+		Dshi_1865	0.17	+1.1
1,944,190	+		Dshi_1865	0.17	+0.5
1,944,191	+		Dshi_1865	0.17	+0.9
1,944,198	-		Dshi_1865	0.18	+1.4
1,944,201	+		Dshi_1865	0.18	-2.4
1,944,206	+		Dshi_1865	0.19	-1.2
1,944,209	-		Dshi_1865	0.19	+3.2
1,944,211	+		Dshi_1865	0.19	-1.3
1,944,214	+		Dshi_1865	0.19	-0.3
1,944,216	+		Dshi_1865	0.20	-0.5
1,944,216	+		Dshi_1865	0.20	+0.3
1,944,224	-		Dshi_1865	0.21	-0.2
1,944,246	+		Dshi_1865	0.23	-0.8
1,944,254	-		Dshi_1865	0.24	+0.5
1,944,254	-		Dshi_1865	0.24	-0.5
1,944,254	-		Dshi_1865	0.24	-0.6
1,944,254	-		Dshi_1865	0.24	+0.3
1,944,254	-		Dshi_1865	0.24	-1.3
1,944,440	+		Dshi_1865	0.45	+0.5
1,944,440	+		Dshi_1865	0.45	-0.1
1,944,448	-		Dshi_1865	0.46	+0.5
1,944,448	-		Dshi_1865	0.46	+0.7
1,944,448	-		Dshi_1865	0.46	+1.6
1,944,450	+		Dshi_1865	0.47	-0.2
1,944,450	+		Dshi_1865	0.47	+0.6
1,944,450	+		Dshi_1865	0.47	-0.7
1,944,450	+		Dshi_1865	0.47	+1.4
1,944,450	+		Dshi_1865	0.47	-2.3
1,944,455	+		Dshi_1865	0.47	+0.9
1,944,455	+		Dshi_1865	0.47	+0.2
1,944,458	-		Dshi_1865	0.47	-0.1
1,944,458	-		Dshi_1865	0.47	+0.4
1,944,463	-		Dshi_1865	0.48	+1.4
1,944,463	-		Dshi_1865	0.48	+0.3
1,944,463	-		Dshi_1865	0.48	-0.2
1,944,463	-		Dshi_1865	0.48	+0.7
1,944,463	-		Dshi_1865	0.48	-0.4
1,944,463	-		Dshi_1865	0.48	-1.3
1,944,491	-		Dshi_1865	0.51	-0.9
1,944,496	+		Dshi_1865	0.52	-0.2
1,944,496	+		Dshi_1865	0.52	-0.7
1,944,496	+		Dshi_1865	0.52	+1.5
1,944,496	+		Dshi_1865	0.52	-0.4
1,944,496	+		Dshi_1865	0.52	+0.1
1,944,496	+		Dshi_1865	0.52	-1.8
1,944,496	+		Dshi_1865	0.52	-0.2
1,944,496	+		Dshi_1865	0.52	-1.6
1,944,496	+		Dshi_1865	0.52	-0.6
1,944,496	+		Dshi_1865	0.52	+0.4
1,944,496	+		Dshi_1865	0.52	+1.1
1,944,496	+		Dshi_1865	0.52	+1.2
1,944,504	-		Dshi_1865	0.53	-2.5
1,944,504	-		Dshi_1865	0.53	+0.8
1,944,504	-		Dshi_1865	0.53	+0.1
1,944,504	-		Dshi_1865	0.53	-3.1
1,944,531	+		Dshi_1865	0.56	+2.4
1,944,537	+		Dshi_1865	0.57	-0.3
1,944,539	-		Dshi_1865	0.57	-0.3
1,944,539	-		Dshi_1865	0.57	-1.8
1,944,539	-		Dshi_1865	0.57	-2.4
1,944,539	-		Dshi_1865	0.57	-0.3
1,944,544	-		Dshi_1865	0.57	-1.8
1,944,546	+		Dshi_1865	0.58	-0.6
1,944,553	+		Dshi_1865	0.58	+0.4
1,944,554	-		Dshi_1865	0.59	-0.9
1,944,554	-		Dshi_1865	0.59	+3.2
1,944,557	+		Dshi_1865	0.59	-1.6
1,944,557	+		Dshi_1865	0.59	-0.7
1,944,557	+		Dshi_1865	0.59	-0.3
1,944,557	+		Dshi_1865	0.59	+0.5
1,944,557	-		Dshi_1865	0.59	-0.3
1,944,561	-		Dshi_1865	0.59	+0.2
1,944,561	-		Dshi_1865	0.59	+0.6
1,944,561	-		Dshi_1865	0.59	-0.3
1,944,563	+		Dshi_1865	0.60	-2.4
1,944,565	-		Dshi_1865	0.60	-0.1
1,944,565	-		Dshi_1865	0.60	-0.2
1,944,565	-		Dshi_1865	0.60	+1.4
1,944,567	+		Dshi_1865	0.60	+0.8
1,944,567	+		Dshi_1865	0.60	-0.1
1,944,567	+		Dshi_1865	0.60	+0.8
1,944,567	+		Dshi_1865	0.60	+0.9
1,944,577	+		Dshi_1865	0.61	+1.5
1,944,585	+		Dshi_1865	0.62	-0.2
1,944,585	-		Dshi_1865	0.62	-0.2
1,944,585	-		Dshi_1865	0.62	-2.4
1,944,585	-		Dshi_1865	0.62	+0.7
1,944,596	-		Dshi_1865	0.63	+2.0
1,944,603	+		Dshi_1865	0.64	+1.2
1,944,603	+		Dshi_1865	0.64	-1.1
1,944,604	+		Dshi_1865	0.64	+0.5
1,944,611	-		Dshi_1865	0.65	+0.9
1,944,611	-		Dshi_1865	0.65	-0.5
1,944,612	-		Dshi_1865	0.65	-2.0
1,944,616	+		Dshi_1865	0.66	+0.5
1,944,619	-		Dshi_1865	0.66	+1.3
1,944,631	+		Dshi_1865	0.67	+0.7
1,944,634	-		Dshi_1865	0.68	-0.3
1,944,636	+		Dshi_1865	0.68	+0.1
1,944,636	+		Dshi_1865	0.68	-1.9
1,944,636	+		Dshi_1865	0.68	-0.7
1,944,636	+		Dshi_1865	0.68	-1.3
1,944,636	+		Dshi_1865	0.68	-0.1
1,944,636	+		Dshi_1865	0.68	+0.2
1,944,636	+		Dshi_1865	0.68	-0.4
1,944,636	+		Dshi_1865	0.68	-0.3
1,944,636	+				-0.2
1,944,636	+		Dshi_1865	0.68	-0.9
1,944,639	-		Dshi_1865	0.68	+0.8
1,944,641	-		Dshi_1865	0.69	+1.9
1,944,644	-		Dshi_1865	0.69	-0.2
1,944,644	-		Dshi_1865	0.69	+0.7
1,944,644	-		Dshi_1865	0.69	-2.7
1,944,646	+		Dshi_1865	0.69	+0.7
1,944,654	-		Dshi_1865	0.70	+0.5
1,944,659	-		Dshi_1865	0.71	+0.4
1,944,669	-		Dshi_1865	0.72	-2.9
1,944,683	-		Dshi_1865	0.73	+0.3
1,944,689	+		Dshi_1865	0.74	-2.3
1,944,704	+		Dshi_1865	0.76	+0.3
1,944,712	-		Dshi_1865	0.77	+1.4
1,944,745	-		Dshi_1865	0.80	+0.1
1,944,750	+		Dshi_1865	0.81	+0.3
1,944,750	-		Dshi_1865	0.81	-1.0
1,944,750	-		Dshi_1865	0.81	+0.8
1,944,758	-		Dshi_1865	0.82	-1.4
1,944,759	+		Dshi_1865	0.82	+1.1
1,944,759	+		Dshi_1865	0.82	+0.1
1,944,759	-		Dshi_1865	0.82	+0.6
1,944,768	+		Dshi_1865	0.83	-0.7
1,944,768	+		Dshi_1865	0.83	-1.5
1,944,769	+		Dshi_1865	0.83	+0.3
1,944,769	+		Dshi_1865	0.83	-0.5
1,944,769	-		Dshi_1865	0.83	+1.6
1,944,779	-		Dshi_1865	0.84	+0.3
1,944,822	+		Dshi_1865	0.89	-1.0
1,944,869	-				-1.0
1,944,901	+				-1.1
1,944,917	-				-1.5
1,944,926	-				-0.6
1,944,947	+				-2.2
1,944,979	+				-1.2
1,944,987	+				-1.2
1,944,995	-				+0.6
1,945,012	+				+0.3
1,945,012	+				-1.6
1,945,012	+				-0.9
1,945,012	+				-1.7
1,945,012	+				-0.0
1,945,012	+				-2.9
1,945,012	+				+0.2
1,945,012	+				+0.3
1,945,012	+				+0.1
1,945,012	+				-2.0
1,945,012	+				-0.3
1,945,012	+				-1.0
1,945,012	+				-1.8
1,945,012	+				-0.8
1,945,012	+				-0.1
1,945,012	+				+2.2
1,945,012	+				+1.3
1,945,012	+				-1.9
1,945,012	+				-1.4
1,945,012	+				-1.3
1,945,017	+				-0.2
1,945,020	-				-0.1
1,945,020	-				-0.9
1,945,020	-				-1.2
1,945,020	-				-4.0
1,945,020	-				-0.5
1,945,020	-				+1.3
1,945,020	-				+0.9
1,945,020	-				-0.6
1,945,020	-				+0.2
1,945,020	-				-0.1
1,945,020	-				-0.4
1,945,020	-				+1.8
1,945,020	-				+0.4
1,945,020	-				+1.1
1,945,022	+				-0.3
1,945,022	+				+0.3
1,945,022	+				-1.3
1,945,022	+				-0.6
1,945,022	+				+0.8
1,945,022	+				+1.9
1,945,022	+				+0.8
1,945,022	+				-0.7
1,945,022	+				-0.2
1,945,022	+				+1.5
1,945,022	+				-0.4
1,945,024	+				-1.5
1,945,030	-				+0.0
1,945,030	-				-0.0
1,945,030	-				+0.0
1,945,030	-				-2.2
1,945,030	-				-0.9
1,945,030	-				+1.3
1,945,030	-				-3.0
1,945,032	-				-0.7
1,945,035	+				+2.4
1,945,035	+				+0.6
1,945,035	+				-0.5
1,945,035	+				+0.4
1,945,035	+				+0.7
1,945,035	+				-0.6
1,945,035	+				-1.4
1,945,043	-				+1.0
1,945,043	-				-0.4
1,945,043	-				-1.5
1,945,043	-				+0.4
1,945,043	-				-0.5
1,945,051	+				+0.5
1,945,059	-				+0.8
1,945,061	-				-0.8
1,945,066	-				-0.4
1,945,066	-				+2.8
1,945,066	-				-2.3
1,945,071	-				+1.0
1,945,072	+				+1.3
1,945,072	+				+2.4
1,945,080	-				-0.7
1,945,087	-				-1.5
1,945,089	+				+0.3
1,945,089	+				+0.1
1,945,089	+				+0.4
1,945,089	+				-2.0
1,945,089	+				+0.2
1,945,089	+				-3.3
1,945,089	+				-2.2
1,945,089	+				+0.3
1,945,089	+				+2.2
1,945,089	+				-1.5
1,945,089	+				+1.7
1,945,095	+				+0.6
1,945,095	+				+0.4
1,945,095	+				+1.2
1,945,095	+				-0.4
1,945,095	+				+0.5
1,945,097	-				+0.3
1,945,097	-				+1.4
1,945,097	-				-0.6
1,945,097	-				+0.3
1,945,097	-				-0.8
1,945,097	-				-1.3
1,945,097	-				+0.8
1,945,103	+				+2.4
1,945,103	+				-1.3
1,945,103	+				-0.6
1,945,103	+				-0.4
1,945,103	-				+1.1
1,945,103	-				-0.4
1,945,110	+				+1.7
1,945,115	+				-0.6
1,945,115	+				+1.1
1,945,115	+				+1.0
1,945,115	+				-1.1
1,945,115	+				-1.0
1,945,116	+				-2.9
1,945,118	-				+0.3
1,945,120	-				-1.0
1,945,123	-				-2.0
1,945,123	-				-0.1
1,945,123	-				-0.8
1,945,123	-				-0.4
1,945,129	+				+0.4
1,945,138	+				-0.4
1,945,158	-				-0.7
1,945,167	+				-0.4
1,945,169	+				+1.1
1,945,170	-				+0.1
1,945,174	+				-1.3
1,945,175	-				+0.7
1,945,175	-				-0.6
1,945,181	-				-1.2
1,945,183	-				-2.4
1,945,194	+				-2.0
1,945,194	+				+0.0
1,945,194	+				-0.1
1,945,194	+				-1.5
1,945,194	+				-0.4
1,945,194	+				+0.1
1,945,200	+				-1.3
1,945,202	-				+0.5
1,945,202	-				-0.5
1,945,204	+				+0.7
1,945,204	+				-1.3
1,945,205	+				-1.6
1,945,205	+				-1.3
1,945,206	+				+0.1
1,945,206	+				-1.2
1,945,208	-				+1.4
1,945,212	+				-0.4
1,945,214	-				-2.8
1,945,214	-				-1.2
1,945,215	-				-2.6
1,945,222	+				-3.0
1,945,224	+				+0.8
1,945,224	+				+0.7
1,945,227	+				+1.0
1,945,232	+				+0.7
1,945,232	+				-0.5
1,945,232	-				+0.2
1,945,240	-				-0.1
1,945,264	+				+1.1
1,945,275	+				-0.9
1,945,292	-		Dshi_1866	0.10	-0.6
1,945,314	-		Dshi_1866	0.13	-1.1
1,945,317	+		Dshi_1866	0.13	-0.9
1,945,367	+		Dshi_1866	0.19	+0.1
1,945,393	-		Dshi_1866	0.23	+1.4
1,945,400	+		Dshi_1866	0.23	-3.2
1,945,408	-		Dshi_1866	0.24	+1.6
1,945,419	-		Dshi_1866	0.26	-1.6
1,945,485	+		Dshi_1866	0.34	-0.2
1,945,526	-		Dshi_1866	0.39	-0.2
1,945,532	+		Dshi_1866	0.39	-1.4
1,945,540	-		Dshi_1866	0.40	-0.2
1,945,604	+				+3.0
1,945,614	+		Dshi_1866	0.49	+0.2
1,945,614	+		Dshi_1866	0.49	+1.2
1,945,614	+		Dshi_1866	0.49	-1.3
1,945,622	-		Dshi_1866	0.50	-0.1
1,945,622	-		Dshi_1866	0.50	-1.0
1,945,659	-		Dshi_1866	0.55	+1.4
1,945,692	-		Dshi_1866	0.59	-0.0
1,945,721	+		Dshi_1866	0.62	+0.3
1,945,745	-		Dshi_1866	0.65	+0.9
1,945,821	+		Dshi_1866	0.75	-0.3
1,945,865	+		Dshi_1866	0.80	+0.2
1,945,873	-		Dshi_1866	0.81	+0.1