Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1791

Experiment: m.b. Cholin acetate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1789 and Dshi_1790 are separated by 104 nucleotidesDshi_1790 and Dshi_1791 are separated by 1 nucleotidesDshi_1791 and Dshi_1792 overlap by 4 nucleotidesDshi_1792 and Dshi_1793 are separated by 62 nucleotides Dshi_1789: Dshi_1789 - Pyridoxal 5'-phosphate synthase (RefSeq), at 1,860,527 to 1,861,132 _1789 Dshi_1790: Dshi_1790 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,861,237 to 1,862,055 _1790 Dshi_1791: Dshi_1791 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 1,862,057 to 1,862,668 _1791 Dshi_1792: Dshi_1792 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 1,862,665 to 1,863,276 _1792 Dshi_1793: Dshi_1793 - Xanthine phosphoribosyltransferase (RefSeq), at 1,863,339 to 1,863,842 _1793 Position (kb) 1862 1863Strain fitness (log2 ratio) -3 -2 -1 0 1at 1861.149 kb on - strandat 1862.064 kb on - strandat 1862.192 kb on - strand, within Dshi_1791at 1862.194 kb on + strand, within Dshi_1791at 1862.228 kb on + strand, within Dshi_1791at 1862.431 kb on + strand, within Dshi_1791at 1862.439 kb on - strand, within Dshi_1791at 1862.511 kb on - strand, within Dshi_1791at 1862.540 kb on - strand, within Dshi_1791at 1862.768 kb on + strand, within Dshi_1792at 1863.005 kb on + strand, within Dshi_1792at 1863.092 kb on + strand, within Dshi_1792at 1863.182 kb on + strand, within Dshi_1792at 1863.190 kb on - strand, within Dshi_1792at 1863.193 kb on + strand, within Dshi_1792at 1863.238 kb on + strandat 1863.567 kb on - strand, within Dshi_1793

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM
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1,861,149 - +1.0
1,862,064 - +0.2
1,862,192 - Dshi_1791 0.22 -2.5
1,862,194 + Dshi_1791 0.22 +1.4
1,862,228 + Dshi_1791 0.28 +0.2
1,862,431 + Dshi_1791 0.61 +0.2
1,862,439 - Dshi_1791 0.62 -0.9
1,862,511 - Dshi_1791 0.74 -0.4
1,862,540 - Dshi_1791 0.79 -1.0
1,862,768 + Dshi_1792 0.17 +0.2
1,863,005 + Dshi_1792 0.56 -0.2
1,863,092 + Dshi_1792 0.70 -0.4
1,863,182 + Dshi_1792 0.84 -3.1
1,863,190 - Dshi_1792 0.86 -2.0
1,863,193 + Dshi_1792 0.86 +0.3
1,863,238 + +1.4
1,863,567 - Dshi_1793 0.45 -0.2

Or see this region's nucleotide sequence