Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1511

Experiment: m.b. Cholin acetate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1510 and Dshi_1511 are separated by 399 nucleotidesDshi_1511 and Dshi_1512 overlap by 4 nucleotides Dshi_1510: Dshi_1510 - DEAD/DEAH box helicase domain protein (RefSeq), at 1,570,952 to 1,573,042 _1510 Dshi_1511: Dshi_1511 - Carboxypeptidase Taq (RefSeq), at 1,573,442 to 1,574,914 _1511 Dshi_1512: Dshi_1512 - cytochrome oxidase assembly (RefSeq), at 1,574,911 to 1,576,062 _1512 Position (kb) 1573 1574 1575Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1572.607 kb on - strand, within Dshi_1510at 1572.760 kb on + strand, within Dshi_1510at 1572.760 kb on + strand, within Dshi_1510at 1572.865 kb on - strandat 1573.537 kb on - strandat 1573.714 kb on - strand, within Dshi_1511at 1573.722 kb on - strand, within Dshi_1511at 1573.749 kb on - strand, within Dshi_1511at 1573.779 kb on + strand, within Dshi_1511at 1574.107 kb on - strand, within Dshi_1511at 1574.457 kb on + strand, within Dshi_1511at 1574.652 kb on - strand, within Dshi_1511at 1574.777 kb on - strandat 1574.868 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM
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1,572,607 - Dshi_1510 0.79 -1.2
1,572,760 + Dshi_1510 0.86 -1.2
1,572,760 + Dshi_1510 0.86 -0.6
1,572,865 - -1.2
1,573,537 - -1.6
1,573,714 - Dshi_1511 0.18 +2.9
1,573,722 - Dshi_1511 0.19 -1.3
1,573,749 - Dshi_1511 0.21 +0.8
1,573,779 + Dshi_1511 0.23 -1.7
1,574,107 - Dshi_1511 0.45 -2.0
1,574,457 + Dshi_1511 0.69 +0.4
1,574,652 - Dshi_1511 0.82 -0.3
1,574,777 - +1.2
1,574,868 + -0.8

Or see this region's nucleotide sequence