Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0982

Experiment: m.b. Cholin acetate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0980 and Dshi_0981 are separated by 3 nucleotidesDshi_0981 and Dshi_0982 are separated by 149 nucleotidesDshi_0982 and Dshi_0983 are separated by 2 nucleotidesDshi_0983 and Dshi_0984 overlap by 4 nucleotides Dshi_0980: Dshi_0980 - hypothetical protein (RefSeq), at 1,001,850 to 1,002,329 _0980 Dshi_0981: Dshi_0981 - protein tyrosine phosphatase (RefSeq), at 1,002,333 to 1,002,788 _0981 Dshi_0982: Dshi_0982 - translation initiation factor IF-1 (RefSeq), at 1,002,938 to 1,003,156 _0982 Dshi_0983: Dshi_0983 - maf protein (RefSeq), at 1,003,159 to 1,003,743 _0983 Dshi_0984: Dshi_0984 - ribonuclease (RefSeq), at 1,003,740 to 1,004,783 _0984 Position (kb) 1002 1003 1004Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1002.004 kb on + strand, within Dshi_0980at 1002.010 kb on + strand, within Dshi_0980at 1002.060 kb on + strand, within Dshi_0980at 1002.167 kb on + strand, within Dshi_0980at 1002.175 kb on - strand, within Dshi_0980at 1002.190 kb on - strand, within Dshi_0980at 1002.201 kb on + strand, within Dshi_0980at 1002.459 kb on + strand, within Dshi_0981at 1002.567 kb on + strand, within Dshi_0981at 1002.611 kb on + strand, within Dshi_0981at 1002.627 kb on - strand, within Dshi_0981at 1002.659 kb on - strand, within Dshi_0981at 1002.659 kb on - strand, within Dshi_0981at 1002.687 kb on + strand, within Dshi_0981at 1002.720 kb on + strand, within Dshi_0981at 1002.723 kb on - strand, within Dshi_0981at 1003.232 kb on - strand, within Dshi_0983at 1003.381 kb on + strand, within Dshi_0983at 1003.496 kb on + strand, within Dshi_0983at 1003.531 kb on + strand, within Dshi_0983at 1003.602 kb on + strand, within Dshi_0983at 1003.658 kb on - strand, within Dshi_0983at 1003.680 kb on - strand, within Dshi_0983at 1003.715 kb on + strandat 1003.715 kb on + strandat 1003.991 kb on + strand, within Dshi_0984at 1004.045 kb on + strand, within Dshi_0984

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM
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1,002,004 + Dshi_0980 0.32 -0.4
1,002,010 + Dshi_0980 0.33 +0.7
1,002,060 + Dshi_0980 0.44 -0.5
1,002,167 + Dshi_0980 0.66 -0.3
1,002,175 - Dshi_0980 0.68 -0.3
1,002,190 - Dshi_0980 0.71 +0.5
1,002,201 + Dshi_0980 0.73 +0.7
1,002,459 + Dshi_0981 0.28 +0.6
1,002,567 + Dshi_0981 0.51 +0.0
1,002,611 + Dshi_0981 0.61 -0.1
1,002,627 - Dshi_0981 0.64 +0.2
1,002,659 - Dshi_0981 0.71 -0.7
1,002,659 - Dshi_0981 0.71 +0.9
1,002,687 + Dshi_0981 0.78 -1.1
1,002,720 + Dshi_0981 0.85 -0.4
1,002,723 - Dshi_0981 0.86 +1.9
1,003,232 - Dshi_0983 0.12 +0.2
1,003,381 + Dshi_0983 0.38 +0.3
1,003,496 + Dshi_0983 0.58 +1.3
1,003,531 + Dshi_0983 0.64 -1.0
1,003,602 + Dshi_0983 0.76 +0.0
1,003,658 - Dshi_0983 0.85 -1.6
1,003,680 - Dshi_0983 0.89 +2.0
1,003,715 + +1.2
1,003,715 + -3.5
1,003,991 + Dshi_0984 0.24 +2.3
1,004,045 + Dshi_0984 0.29 +2.2

Or see this region's nucleotide sequence