Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0980 and Dshi_0981 are separated by 3 nucleotides Dshi_0981 and Dshi_0982 are separated by 149 nucleotides Dshi_0982 and Dshi_0983 are separated by 2 nucleotides Dshi_0983 and Dshi_0984 overlap by 4 nucleotides
Dshi_0980: Dshi_0980 - hypothetical protein (RefSeq), at 1,001,850 to 1,002,329
_0980
Dshi_0981: Dshi_0981 - protein tyrosine phosphatase (RefSeq), at 1,002,333 to 1,002,788
_0981
Dshi_0982: Dshi_0982 - translation initiation factor IF-1 (RefSeq), at 1,002,938 to 1,003,156
_0982
Dshi_0983: Dshi_0983 - maf protein (RefSeq), at 1,003,159 to 1,003,743
_0983
Dshi_0984: Dshi_0984 - ribonuclease (RefSeq), at 1,003,740 to 1,004,783
_0984
Position (kb)
1002
1003
1004 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1002.004 kb on + strand, within Dshi_0980 at 1002.010 kb on + strand, within Dshi_0980 at 1002.060 kb on + strand, within Dshi_0980 at 1002.167 kb on + strand, within Dshi_0980 at 1002.175 kb on - strand, within Dshi_0980 at 1002.190 kb on - strand, within Dshi_0980 at 1002.201 kb on + strand, within Dshi_0980 at 1002.459 kb on + strand, within Dshi_0981 at 1002.567 kb on + strand, within Dshi_0981 at 1002.611 kb on + strand, within Dshi_0981 at 1002.627 kb on - strand, within Dshi_0981 at 1002.659 kb on - strand, within Dshi_0981 at 1002.659 kb on - strand, within Dshi_0981 at 1002.687 kb on + strand, within Dshi_0981 at 1002.720 kb on + strand, within Dshi_0981 at 1002.723 kb on - strand, within Dshi_0981 at 1003.232 kb on - strand, within Dshi_0983 at 1003.381 kb on + strand, within Dshi_0983 at 1003.496 kb on + strand, within Dshi_0983 at 1003.531 kb on + strand, within Dshi_0983 at 1003.602 kb on + strand, within Dshi_0983 at 1003.658 kb on - strand, within Dshi_0983 at 1003.680 kb on - strand, within Dshi_0983 at 1003.715 kb on + strand at 1003.715 kb on + strand at 1003.991 kb on + strand, within Dshi_0984 at 1004.045 kb on + strand, within Dshi_0984
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 1,002,004 + Dshi_0980 0.32 -0.4 1,002,010 + Dshi_0980 0.33 +0.7 1,002,060 + Dshi_0980 0.44 -0.5 1,002,167 + Dshi_0980 0.66 -0.3 1,002,175 - Dshi_0980 0.68 -0.3 1,002,190 - Dshi_0980 0.71 +0.5 1,002,201 + Dshi_0980 0.73 +0.7 1,002,459 + Dshi_0981 0.28 +0.6 1,002,567 + Dshi_0981 0.51 +0.0 1,002,611 + Dshi_0981 0.61 -0.1 1,002,627 - Dshi_0981 0.64 +0.2 1,002,659 - Dshi_0981 0.71 -0.7 1,002,659 - Dshi_0981 0.71 +0.9 1,002,687 + Dshi_0981 0.78 -1.1 1,002,720 + Dshi_0981 0.85 -0.4 1,002,723 - Dshi_0981 0.86 +1.9 1,003,232 - Dshi_0983 0.12 +0.2 1,003,381 + Dshi_0983 0.38 +0.3 1,003,496 + Dshi_0983 0.58 +1.3 1,003,531 + Dshi_0983 0.64 -1.0 1,003,602 + Dshi_0983 0.76 +0.0 1,003,658 - Dshi_0983 0.85 -1.6 1,003,680 - Dshi_0983 0.89 +2.0 1,003,715 + +1.2 1,003,715 + -3.5 1,003,991 + Dshi_0984 0.24 +2.3 1,004,045 + Dshi_0984 0.29 +2.2
Or see this region's nucleotide sequence