Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0965

Experiment: m.b. Cholin acetate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0964 and Dshi_0965 are separated by 111 nucleotidesDshi_0965 and Dshi_0967 are separated by 668 nucleotides Dshi_0964: Dshi_0964 - hypothetical protein (RefSeq), at 987,364 to 987,915 _0964 Dshi_0965: Dshi_0965 - hypothetical protein (RefSeq), at 988,027 to 988,380 _0965 Dshi_0967: Dshi_0967 - fumarylacetoacetate (FAA) hydrolase (RefSeq), at 989,049 to 989,933 _0967 Position (kb) 988 989Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 987.082 kb on + strandat 987.116 kb on + strandat 987.126 kb on + strandat 987.175 kb on - strandat 987.180 kb on - strandat 987.207 kb on + strandat 987.214 kb on + strandat 987.253 kb on + strandat 987.265 kb on + strandat 987.265 kb on + strandat 987.273 kb on - strandat 987.290 kb on - strandat 987.293 kb on + strandat 987.293 kb on + strandat 987.310 kb on + strandat 987.328 kb on - strandat 987.397 kb on - strandat 987.426 kb on - strand, within Dshi_0964at 987.470 kb on - strand, within Dshi_0964at 987.470 kb on - strand, within Dshi_0964at 987.496 kb on + strand, within Dshi_0964at 987.649 kb on + strand, within Dshi_0964at 987.649 kb on + strand, within Dshi_0964at 987.657 kb on - strand, within Dshi_0964at 987.775 kb on - strand, within Dshi_0964at 987.795 kb on - strand, within Dshi_0964at 988.008 kb on - strandat 988.022 kb on - strandat 988.044 kb on + strandat 988.052 kb on - strandat 988.088 kb on + strand, within Dshi_0965at 988.116 kb on + strand, within Dshi_0965at 988.136 kb on + strand, within Dshi_0965at 988.153 kb on - strand, within Dshi_0965at 988.167 kb on + strand, within Dshi_0965at 988.183 kb on - strand, within Dshi_0965at 988.219 kb on - strand, within Dshi_0965at 988.298 kb on - strand, within Dshi_0965at 988.298 kb on - strand, within Dshi_0965at 988.321 kb on - strand, within Dshi_0965at 988.333 kb on + strand, within Dshi_0965at 988.361 kb on + strandat 988.369 kb on - strandat 988.376 kb on + strandat 988.392 kb on - strandat 988.393 kb on - strandat 988.548 kb on - strandat 988.551 kb on + strandat 988.552 kb on + strandat 988.555 kb on - strandat 988.561 kb on - strandat 988.567 kb on - strandat 988.663 kb on + strandat 988.670 kb on + strandat 988.707 kb on + strandat 988.715 kb on - strandat 988.747 kb on - strandat 988.851 kb on - strandat 988.979 kb on - strandat 988.997 kb on + strandat 989.019 kb on + strandat 989.090 kb on + strandat 989.097 kb on + strandat 989.115 kb on - strandat 989.237 kb on + strand, within Dshi_0967at 989.256 kb on + strand, within Dshi_0967at 989.256 kb on + strand, within Dshi_0967at 989.256 kb on + strand, within Dshi_0967at 989.256 kb on + strand, within Dshi_0967at 989.264 kb on - strand, within Dshi_0967at 989.264 kb on - strand, within Dshi_0967at 989.322 kb on + strand, within Dshi_0967at 989.332 kb on - strand, within Dshi_0967

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM
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987,082 + -0.6
987,116 + +1.5
987,126 + -1.7
987,175 - +1.8
987,180 - +1.3
987,207 + +1.0
987,214 + -0.6
987,253 + -0.1
987,265 + -0.2
987,265 + -0.6
987,273 - +0.2
987,290 - +0.7
987,293 + +0.9
987,293 + -0.6
987,310 + -2.4
987,328 - +0.6
987,397 - +0.5
987,426 - Dshi_0964 0.11 +1.0
987,470 - Dshi_0964 0.19 +0.2
987,470 - Dshi_0964 0.19 +0.8
987,496 + Dshi_0964 0.24 -0.7
987,649 + Dshi_0964 0.52 -3.1
987,649 + Dshi_0964 0.52 -1.5
987,657 - Dshi_0964 0.53 -0.3
987,775 - Dshi_0964 0.74 +0.9
987,795 - Dshi_0964 0.78 +0.5
988,008 - -0.3
988,022 - -0.3
988,044 + +0.2
988,052 - -1.4
988,088 + Dshi_0965 0.17 +3.1
988,116 + Dshi_0965 0.25 +0.4
988,136 + Dshi_0965 0.31 -1.6
988,153 - Dshi_0965 0.36 -1.8
988,167 + Dshi_0965 0.40 +1.1
988,183 - Dshi_0965 0.44 -0.5
988,219 - Dshi_0965 0.54 +1.2
988,298 - Dshi_0965 0.77 -0.8
988,298 - Dshi_0965 0.77 +0.1
988,321 - Dshi_0965 0.83 -0.5
988,333 + Dshi_0965 0.86 -0.9
988,361 + -1.1
988,369 - +1.5
988,376 + +0.7
988,392 - -1.3
988,393 - +1.1
988,548 - +0.3
988,551 + -0.2
988,552 + +1.1
988,555 - +1.4
988,561 - -1.7
988,567 - -0.6
988,663 + -0.0
988,670 + -0.1
988,707 + +2.4
988,715 - -2.6
988,747 - -1.4
988,851 - -0.4
988,979 - +0.5
988,997 + -0.8
989,019 + +0.7
989,090 + -2.6
989,097 + +0.1
989,115 - -0.4
989,237 + Dshi_0967 0.21 -0.4
989,256 + Dshi_0967 0.23 -1.1
989,256 + Dshi_0967 0.23 -0.6
989,256 + Dshi_0967 0.23 +0.1
989,256 + Dshi_0967 0.23 +3.8
989,264 - Dshi_0967 0.24 +0.1
989,264 - Dshi_0967 0.24 +0.6
989,322 + Dshi_0967 0.31 +1.7
989,332 - Dshi_0967 0.32 +0.5

Or see this region's nucleotide sequence