Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0952 and Dshi_0953 are separated by 35 nucleotides Dshi_0953 and Dshi_0954 are separated by 250 nucleotides
Dshi_0952: Dshi_0952 - tryptophan synthase, alpha subunit (RefSeq), at 976,376 to 977,194
_0952
Dshi_0953: Dshi_0953 - MATE efflux family protein (RefSeq), at 977,230 to 978,582
_0953
Dshi_0954: Dshi_0954 - GTP-binding protein YchF (RefSeq), at 978,833 to 979,930
_0954
Position (kb) 977
978
979 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 976.340 kb on - strand at 977.319 kb on - strand at 977.350 kb on - strand at 977.424 kb on + strand, within Dshi_0953 at 977.454 kb on + strand, within Dshi_0953 at 977.460 kb on + strand, within Dshi_0953 at 977.490 kb on + strand, within Dshi_0953 at 977.497 kb on + strand, within Dshi_0953 at 977.512 kb on - strand, within Dshi_0953 at 977.522 kb on - strand, within Dshi_0953 at 977.543 kb on - strand, within Dshi_0953 at 977.660 kb on - strand, within Dshi_0953 at 977.760 kb on + strand, within Dshi_0953 at 977.783 kb on - strand, within Dshi_0953 at 977.788 kb on - strand, within Dshi_0953 at 977.791 kb on + strand, within Dshi_0953 at 977.822 kb on - strand, within Dshi_0953 at 977.832 kb on - strand, within Dshi_0953 at 977.955 kb on + strand, within Dshi_0953 at 977.994 kb on - strand, within Dshi_0953 at 978.006 kb on + strand, within Dshi_0953 at 978.020 kb on + strand, within Dshi_0953 at 978.057 kb on - strand, within Dshi_0953 at 978.080 kb on + strand, within Dshi_0953 at 978.259 kb on + strand, within Dshi_0953 at 978.329 kb on + strand, within Dshi_0953 at 978.337 kb on - strand, within Dshi_0953 at 978.337 kb on - strand, within Dshi_0953 at 978.349 kb on + strand, within Dshi_0953 at 978.378 kb on - strand, within Dshi_0953 at 978.437 kb on + strand, within Dshi_0953 at 978.437 kb on + strand, within Dshi_0953 at 978.556 kb on + strand at 978.584 kb on + strand at 978.595 kb on - strand at 978.645 kb on + strand at 978.652 kb on - strand at 978.729 kb on - strand at 978.756 kb on + strand at 978.756 kb on + strand at 978.756 kb on + strand at 978.764 kb on - strand at 979.160 kb on - strand, within Dshi_0954
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 976,340 - -1.9 977,319 - +2.8 977,350 - -2.7 977,424 + Dshi_0953 0.14 -0.6 977,454 + Dshi_0953 0.17 -1.4 977,460 + Dshi_0953 0.17 +0.1 977,490 + Dshi_0953 0.19 -1.3 977,497 + Dshi_0953 0.20 -2.4 977,512 - Dshi_0953 0.21 -2.0 977,522 - Dshi_0953 0.22 -3.1 977,543 - Dshi_0953 0.23 -1.8 977,660 - Dshi_0953 0.32 -1.0 977,760 + Dshi_0953 0.39 +1.0 977,783 - Dshi_0953 0.41 -0.5 977,788 - Dshi_0953 0.41 -1.2 977,791 + Dshi_0953 0.41 +0.6 977,822 - Dshi_0953 0.44 +2.4 977,832 - Dshi_0953 0.44 -2.3 977,955 + Dshi_0953 0.54 -1.5 977,994 - Dshi_0953 0.56 +1.4 978,006 + Dshi_0953 0.57 -0.3 978,020 + Dshi_0953 0.58 +1.8 978,057 - Dshi_0953 0.61 +0.4 978,080 + Dshi_0953 0.63 -0.3 978,259 + Dshi_0953 0.76 -1.1 978,329 + Dshi_0953 0.81 +0.7 978,337 - Dshi_0953 0.82 -0.4 978,337 - Dshi_0953 0.82 -1.7 978,349 + Dshi_0953 0.83 +0.1 978,378 - Dshi_0953 0.85 -2.3 978,437 + Dshi_0953 0.89 -0.2 978,437 + Dshi_0953 0.89 -1.4 978,556 + -1.6 978,584 + +1.0 978,595 - -1.0 978,645 + -1.1 978,652 - -0.7 978,729 - -1.4 978,756 + +1.8 978,756 + +0.8 978,756 + -1.4 978,764 - +0.8 979,160 - Dshi_0954 0.30 -1.7
Or see this region's nucleotide sequence