Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0777 and Dshi_0778 are separated by 128 nucleotides Dshi_0778 and Dshi_0779 are separated by 120 nucleotides Dshi_0779 and Dshi_R0019 are separated by 75 nucleotides Dshi_R0019 and Dshi_0780 are separated by 18 nucleotides
Dshi_0777: Dshi_0777 - threonyl-tRNA synthetase (RefSeq), at 782,164 to 784,128
_0777
Dshi_0778: Dshi_0778 - hypothetical protein (RefSeq), at 784,257 to 784,445
_0778
Dshi_0779: Dshi_0779 - transcriptional regulator, MarR family with acetyltransferase activity (RefSeq), at 784,566 to 785,522
_0779
Dshi_R0019: Dshi_R0019 - tRNA-His (RefSeq), at 785,598 to 785,674
_R0019
Dshi_0780: Dshi_0780 - alpha/beta hydrolase fold (RefSeq), at 785,693 to 786,637
_0780
Position (kb) 784
785
786 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 784.255 kb on + strand at 784.255 kb on + strand at 784.291 kb on + strand, within Dshi_0778 at 784.451 kb on - strand at 784.459 kb on - strand at 784.567 kb on - strand at 784.882 kb on - strand, within Dshi_0779 at 785.031 kb on - strand, within Dshi_0779 at 785.234 kb on - strand, within Dshi_0779 at 785.288 kb on - strand, within Dshi_0779 at 785.330 kb on - strand, within Dshi_0779 at 785.477 kb on - strand at 785.891 kb on + strand, within Dshi_0780 at 785.896 kb on + strand, within Dshi_0780 at 785.899 kb on - strand, within Dshi_0780 at 785.899 kb on - strand, within Dshi_0780 at 785.901 kb on + strand, within Dshi_0780 at 785.904 kb on - strand, within Dshi_0780 at 785.909 kb on - strand, within Dshi_0780 at 785.957 kb on - strand, within Dshi_0780 at 785.999 kb on - strand, within Dshi_0780 at 786.014 kb on - strand, within Dshi_0780 at 786.041 kb on - strand at 786.084 kb on - strand, within Dshi_0780 at 786.180 kb on + strand, within Dshi_0780 at 786.180 kb on + strand, within Dshi_0780 at 786.192 kb on + strand, within Dshi_0780 at 786.194 kb on + strand, within Dshi_0780 at 786.198 kb on - strand, within Dshi_0780 at 786.274 kb on + strand, within Dshi_0780 at 786.362 kb on + strand, within Dshi_0780 at 786.370 kb on - strand, within Dshi_0780 at 786.406 kb on - strand, within Dshi_0780
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 784,255 + -0.4 784,255 + +2.1 784,291 + Dshi_0778 0.18 -1.4 784,451 - +3.5 784,459 - -1.8 784,567 - +0.1 784,882 - Dshi_0779 0.33 -1.2 785,031 - Dshi_0779 0.49 -2.1 785,234 - Dshi_0779 0.70 -0.2 785,288 - Dshi_0779 0.75 -1.8 785,330 - Dshi_0779 0.80 -0.2 785,477 - -1.1 785,891 + Dshi_0780 0.21 -1.0 785,896 + Dshi_0780 0.21 -0.7 785,899 - Dshi_0780 0.22 +0.2 785,899 - Dshi_0780 0.22 +0.9 785,901 + Dshi_0780 0.22 +1.6 785,904 - Dshi_0780 0.22 -1.6 785,909 - Dshi_0780 0.23 +0.5 785,957 - Dshi_0780 0.28 +2.1 785,999 - Dshi_0780 0.32 +1.3 786,014 - Dshi_0780 0.34 +2.1 786,041 - -0.1 786,084 - Dshi_0780 0.41 +2.5 786,180 + Dshi_0780 0.52 +0.7 786,180 + Dshi_0780 0.52 -1.5 786,192 + Dshi_0780 0.53 -2.5 786,194 + Dshi_0780 0.53 +0.2 786,198 - Dshi_0780 0.53 -0.1 786,274 + Dshi_0780 0.61 +0.0 786,362 + Dshi_0780 0.71 +0.9 786,370 - Dshi_0780 0.72 +1.4 786,406 - Dshi_0780 0.75 -1.3
Or see this region's nucleotide sequence