Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0728

Experiment: m.b. Cholin acetate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0727 and Dshi_0728 are separated by 353 nucleotidesDshi_0728 and Dshi_0729 overlap by 4 nucleotidesDshi_0729 and Dshi_0730 overlap by 1 nucleotidesDshi_0730 and Dshi_0731 overlap by 4 nucleotides Dshi_0727: Dshi_0727 - transcriptional regulator, LysR family (RefSeq), at 735,721 to 736,650 _0727 Dshi_0728: Dshi_0728 - NADH dehydrogenase (quinone) (RefSeq), at 737,004 to 739,244 _0728 Dshi_0729: Dshi_0729 - Na+/H+ antiporter MnhB subunit-related protein (RefSeq), at 739,241 to 739,693 _0729 Dshi_0730: Dshi_0730 - NADH-ubiquinone oxidoreductase chain 4L (RefSeq), at 739,693 to 740,112 _0730 Dshi_0731: Dshi_0731 - NADH dehydrogenase (quinone) (RefSeq), at 740,109 to 741,644 _0731 Position (kb) 737 738 739 740Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 736.043 kb on - strand, within Dshi_0727at 736.115 kb on + strand, within Dshi_0727at 736.192 kb on - strand, within Dshi_0727at 736.493 kb on + strand, within Dshi_0727at 736.493 kb on + strand, within Dshi_0727at 736.501 kb on - strand, within Dshi_0727at 736.501 kb on - strand, within Dshi_0727at 736.529 kb on + strand, within Dshi_0727at 736.629 kb on + strandat 736.637 kb on - strandat 736.653 kb on - strandat 736.743 kb on + strandat 736.749 kb on + strandat 736.757 kb on - strandat 736.757 kb on - strandat 736.829 kb on + strandat 736.836 kb on - strandat 736.855 kb on + strandat 736.857 kb on - strandat 736.863 kb on - strandat 736.863 kb on - strandat 736.877 kb on + strandat 736.885 kb on - strandat 736.899 kb on + strandat 736.936 kb on + strandat 736.936 kb on - strandat 736.947 kb on + strandat 736.947 kb on + strandat 736.952 kb on + strandat 736.952 kb on + strandat 736.968 kb on + strandat 736.973 kb on + strandat 736.976 kb on - strandat 736.976 kb on - strandat 737.012 kb on + strandat 737.034 kb on + strandat 737.077 kb on - strandat 737.077 kb on - strandat 737.086 kb on + strandat 737.086 kb on + strandat 737.092 kb on + strandat 737.096 kb on + strandat 737.097 kb on + strandat 737.105 kb on - strandat 737.208 kb on + strandat 737.221 kb on - strandat 737.326 kb on + strand, within Dshi_0728at 737.367 kb on - strand, within Dshi_0728at 737.464 kb on - strand, within Dshi_0728at 737.469 kb on + strand, within Dshi_0728at 737.503 kb on + strand, within Dshi_0728at 737.548 kb on + strand, within Dshi_0728at 737.553 kb on + strand, within Dshi_0728at 737.615 kb on + strand, within Dshi_0728at 737.632 kb on - strand, within Dshi_0728at 737.632 kb on - strand, within Dshi_0728at 737.648 kb on - strand, within Dshi_0728at 737.739 kb on - strand, within Dshi_0728at 737.788 kb on - strand, within Dshi_0728at 737.788 kb on - strand, within Dshi_0728at 737.788 kb on - strand, within Dshi_0728at 737.815 kb on + strand, within Dshi_0728at 737.905 kb on - strand, within Dshi_0728at 737.959 kb on + strand, within Dshi_0728at 737.967 kb on - strand, within Dshi_0728at 737.967 kb on - strand, within Dshi_0728at 738.173 kb on + strand, within Dshi_0728at 738.274 kb on - strand, within Dshi_0728at 738.361 kb on + strand, within Dshi_0728at 738.454 kb on + strand, within Dshi_0728at 738.459 kb on + strand, within Dshi_0728at 738.462 kb on - strand, within Dshi_0728at 738.497 kb on - strand, within Dshi_0728at 738.510 kb on - strand, within Dshi_0728at 738.558 kb on + strand, within Dshi_0728at 738.571 kb on + strand, within Dshi_0728at 738.681 kb on - strand, within Dshi_0728at 738.711 kb on + strand, within Dshi_0728at 738.772 kb on - strand, within Dshi_0728at 738.789 kb on - strand, within Dshi_0728at 738.829 kb on - strand, within Dshi_0728at 738.880 kb on + strand, within Dshi_0728at 738.885 kb on - strand, within Dshi_0728at 738.929 kb on + strand, within Dshi_0728at 739.024 kb on + strandat 739.029 kb on + strandat 739.092 kb on - strandat 739.129 kb on + strandat 739.140 kb on - strandat 739.149 kb on - strandat 739.150 kb on - strandat 739.212 kb on - strandat 739.255 kb on + strandat 739.338 kb on + strand, within Dshi_0729at 739.596 kb on + strand, within Dshi_0729at 739.757 kb on - strand, within Dshi_0730at 739.784 kb on + strand, within Dshi_0730at 739.871 kb on + strand, within Dshi_0730at 739.951 kb on + strand, within Dshi_0730at 739.951 kb on - strand, within Dshi_0730at 740.056 kb on + strand, within Dshi_0730at 740.073 kb on + strandat 740.128 kb on + strandat 740.224 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM
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736,043 - Dshi_0727 0.35 -0.2
736,115 + Dshi_0727 0.42 -0.4
736,192 - Dshi_0727 0.51 -1.2
736,493 + Dshi_0727 0.83 -1.8
736,493 + Dshi_0727 0.83 -0.8
736,501 - Dshi_0727 0.84 -0.4
736,501 - Dshi_0727 0.84 +1.1
736,529 + Dshi_0727 0.87 +0.6
736,629 + -3.3
736,637 - -0.7
736,653 - -2.0
736,743 + -1.7
736,749 + +0.0
736,757 - -1.5
736,757 - -1.2
736,829 + +1.0
736,836 - +0.1
736,855 + +1.1
736,857 - +2.0
736,863 - -0.8
736,863 - +0.2
736,877 + -0.3
736,885 - +0.8
736,899 + -0.1
736,936 + -0.9
736,936 - +0.5
736,947 + -0.7
736,947 + +0.8
736,952 + -0.7
736,952 + -1.2
736,968 + -0.4
736,973 + -1.6
736,976 - -0.9
736,976 - +1.1
737,012 + +1.8
737,034 + -0.9
737,077 - +2.4
737,077 - -0.8
737,086 + -0.5
737,086 + +0.8
737,092 + -0.3
737,096 + -0.2
737,097 + -1.9
737,105 - +0.4
737,208 + -1.4
737,221 - +0.7
737,326 + Dshi_0728 0.14 -2.5
737,367 - Dshi_0728 0.16 +3.6
737,464 - Dshi_0728 0.21 +0.8
737,469 + Dshi_0728 0.21 -1.9
737,503 + Dshi_0728 0.22 -0.9
737,548 + Dshi_0728 0.24 -0.1
737,553 + Dshi_0728 0.24 +1.5
737,615 + Dshi_0728 0.27 +2.3
737,632 - Dshi_0728 0.28 +0.1
737,632 - Dshi_0728 0.28 -0.8
737,648 - Dshi_0728 0.29 -0.7
737,739 - Dshi_0728 0.33 +1.5
737,788 - Dshi_0728 0.35 +0.0
737,788 - Dshi_0728 0.35 +0.0
737,788 - Dshi_0728 0.35 -0.1
737,815 + Dshi_0728 0.36 -0.9
737,905 - Dshi_0728 0.40 -0.2
737,959 + Dshi_0728 0.43 -0.9
737,967 - Dshi_0728 0.43 -1.6
737,967 - Dshi_0728 0.43 -1.3
738,173 + Dshi_0728 0.52 +0.8
738,274 - Dshi_0728 0.57 -1.2
738,361 + Dshi_0728 0.61 -0.3
738,454 + Dshi_0728 0.65 +0.6
738,459 + Dshi_0728 0.65 -0.1
738,462 - Dshi_0728 0.65 -0.1
738,497 - Dshi_0728 0.67 +0.6
738,510 - Dshi_0728 0.67 +2.7
738,558 + Dshi_0728 0.69 -0.3
738,571 + Dshi_0728 0.70 +0.2
738,681 - Dshi_0728 0.75 +0.5
738,711 + Dshi_0728 0.76 -0.3
738,772 - Dshi_0728 0.79 -0.2
738,789 - Dshi_0728 0.80 -2.0
738,829 - Dshi_0728 0.81 -0.5
738,880 + Dshi_0728 0.84 +0.2
738,885 - Dshi_0728 0.84 +1.4
738,929 + Dshi_0728 0.86 +0.4
739,024 + -1.9
739,029 + -1.8
739,092 - -0.2
739,129 + -0.2
739,140 - +0.2
739,149 - -2.0
739,150 - +0.8
739,212 - +0.5
739,255 + -0.4
739,338 + Dshi_0729 0.21 +0.8
739,596 + Dshi_0729 0.78 +0.7
739,757 - Dshi_0730 0.15 +2.4
739,784 + Dshi_0730 0.22 +2.0
739,871 + Dshi_0730 0.42 +0.1
739,951 + Dshi_0730 0.61 -1.6
739,951 - Dshi_0730 0.61 +0.8
740,056 + Dshi_0730 0.86 -2.1
740,073 + +2.2
740,128 + +0.7
740,224 + +1.3

Or see this region's nucleotide sequence